Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq516 181 8e-41 seq278 178 1e-39 seq12641 149 5e-31 >seq516 Length=139422 Score = 181 bits (200), Expect = 8e-41 Identities = 584/893 (65%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||||||||| |||| ||| | || || ||| |||| | ||| Sbjct 84891 GAACCGCTTTTGCGCGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTACCACGAT 84832 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| | |||||| | | || ||| | | ||||||||||||||| |||| || Sbjct 84831 ATCTGGAAGAAGTACAAGGAATCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGACTT 84773 Query 61146 GTCCAAAGACATGAATGACTGGGAGC-GTTTATCGA-GCGGTGAACAACATTTCATTAAA 61203 | || ||| || ||||||||| | | | ||| | || ||| | || || || Sbjct 84772 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTT--ATCAAG 84715 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| |||||||||||||||| || || || || ||||| | | | || Sbjct 84714 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGG 84655 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||| || || || |||||| ||| || |||||||| |||||||||||||| Sbjct 84654 TTCATGACGGAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATT 84595 Query 61324 GAGAATGTCCACTCGGAGATGTACA--GTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||| || || ||||| | ||| ||||| | | ||||||||||||| || || Sbjct 84594 GAGAACGTTCATTCGGAAACATACTCGGTGTTGT--TGGATACGTACATCACAGATACGG 84537 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| || || |||| | ||||| ||| || ||| | || || || Sbjct 84536 AGGAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAAAGGCCA 84477 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | ||||| | |||||| ||| || | | | | |||| ||||| | | || | Sbjct 84476 ACTGGGCGATTCGGTGGATCCGCAG--CAGCAG-TTCGTTTGCCGAACGCCTTGTTGCCT 84420 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||||| ||| || ||| | || || || || || || |||| ||| | |||| Sbjct 84419 TTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTCTTCTGGCTAAAGA 84360 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | ||||| || |||||||| ||||| ||||| ||||| | || || || || || ||| Sbjct 84359 AGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCT 84300 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 |||| || ||||| || | | | || ||| | ||||| | ||| Sbjct 84299 TGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAACAAGTTACCAAAGG 84240 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 ||||| | | |||||| || | ||||| ||| || | || ||| | ||||| Sbjct 84239 AGCGTATTCGCGAGATTATTTGCAGTGCGGTGGATATTGAGCGTGAGTTTATCTGTGACG 84180 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | | || || || | || ||||| | | |||||| ||| || || |||| Sbjct 84179 CCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGACGTACATCGAGTTTG 84120 Query 61802 TTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || || || ||| |||| | | |||| | ||| || ||| || | || |||||| Sbjct 84119 TGGCGGATCGGCTGCTGGTGGCACTTGGCAACGAA-CGTCACTACAACTCAAAGAACCCA 84061 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || || || ||||| ||||| || ||| | || ||||| || || || ||||| Sbjct 84060 TTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTCTTTGAGAA 84008 >seq278 Length=37984 Score = 178 bits (196), Expect = 1e-39 Identities = 583/893 (65%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||||||||| |||| ||| | || || ||| ||||| | ||| Sbjct 24484 GAACCGCTTTTGCGCGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTATCATGAT 24425 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| | |||||| | || || ||| | | ||||||||||||||| ||||||| Sbjct 24424 ATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGATTT 24366 Query 61146 GTCCAAAGACATGAATGACTGGGAGC-GTTTATCGA-GCGGTGAACAACATTTCATTAAA 61203 | || ||| || ||||||||| | | | ||| | || ||| | || || || Sbjct 24365 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTT--ATCAAG 24308 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | |||||||||||||| || || || || ||||| | | || Sbjct 24307 CACGTGCTAGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCTCAGCGG 24248 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||| || || || |||||| ||| || |||||||| |||||||||||||| Sbjct 24247 TTCATGACGGAAGTACAGGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATT 24188 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| || || ||||| | ||| || || | ||||||||||||| || || | Sbjct 24187 GAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAG 24128 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || |||| | ||||| ||| || ||| | || || || | Sbjct 24127 GAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAAAGGCCAAC 24068 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 ||||| | |||||| ||| || | | | | |||| ||||| | | || ||| Sbjct 24067 TGGGCGATTCGGTGGATCCGCAG--CAGCAG-TTCGTTTGCAGAACGCCTTGTTGCCTTT 24011 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 |||| ||| || ||| | || || || || || || | || ||| | ||||| Sbjct 24010 GCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAG 23951 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 ||||| || |||||||| ||||| ||||| ||||| | || || || || || ||| || Sbjct 23950 CGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTG 23891 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 || || ||||| || | | | || ||| | ||||| | | |||| Sbjct 23890 CACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAACAAGCTACCAACGGAG 23831 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACG 61741 ||| | | |||||| || | ||||| || || | || || |||| |||| Sbjct 23830 CGTATTCGCGAGATTATTTGCAGTGCGGTGGACATTGAGCGTGAGTTCATCTG--TGACT 23773 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | | || || || | || ||||| | | |||||| ||| || || |||| Sbjct 23772 CCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGACGTACATCGAGTTTG 23713 Query 61802 TTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || || || ||| |||| | | |||| | | |||| ||| || | || |||||| Sbjct 23712 TGGCGGATCGGCTGCTGGTGGCACTTGGCAACG-AGCGTCACTACAACTCAAAGAACCCA 23654 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || || || ||||| |||||||| ||| | || ||||| || || || ||||| Sbjct 23653 TTCGACTTTATGGAAATGATTTCACTGCAGGGAAAGACAAACTTCTTTGAGAA 23601 >seq12641 Length=906 Score = 149 bits (164), Expect = 5e-31 Identities = 518/798 (65%), Gaps = 13/798 (2%) Strand=Plus/Plus Query 61121 TCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCG 61179 |||||||||||||||| |||||||| || ||| || ||||||||| | | | || Sbjct 26 TCTGGACGGTGGAGGAAATCGATTTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACG 85 Query 61180 A-GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTAT 61238 | | || ||| | || || || || ||| | |||||||||||||| || || || Sbjct 86 AAGGGGAGAAGTTCTTT--ATCAAGCACGTGCTAGCGTTCTTTGCCGCAAGTGATGGAAT 143 Query 61239 CGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTG 61298 || ||||| | | || ||| | ||| || || || |||||| ||| || Sbjct 144 TGTGCTGGAGAACCTGGCTCAGCGGTTCATGACGGAAGTACAGGTACCGGAGGTGCGCTG 203 Query 61299 TTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCAT 61358 |||||||| |||||||||||||| ||||| || || ||||| | ||| || || | Sbjct 204 CTTCTACGGGTTCCAGATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTT 263 Query 61359 CGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 ||||||||||||| || || ||| || || |||| | ||||| ||| || Sbjct 264 GGATACGTACATCACAGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACAAT 323 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 ||| | || || || | ||||| | |||||| ||| || | | | | Sbjct 324 TCCGTGCATCCAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAG--CAGCAG-TTC 380 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTT 61538 |||| ||||| | | || ||||||| ||| || ||| | || || || || || Sbjct 381 GTTTGCAGAACGCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTT 440 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || | || ||| | ||||| ||||| || |||||||| ||||| ||||| ||||| Sbjct 441 CTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGA 500 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTA 61658 | || || || || || ||| |||| || ||||| || | | | || ||| Sbjct 501 ACTCATCTCGCGTGATGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTA 560 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | ||||| | | ||||||| | | |||||| || | ||||| || Sbjct 561 CATTGTGAACAAGCTACCAACGGAGCGTATTCGCGAGATTATTTGCAGTGCGGTGGACAT 620 Query 61719 CGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || | || || |||| |||| | | || || || | || ||||| | Sbjct 621 TGAGCGTGAGTTCATCTG--TGACTCCATCCCTGTGCGGCTGCTGGGGATGAACGCAGAT 678 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 | |||||| ||| || || ||||| || || || ||| |||| | | |||| | | | Sbjct 679 TTGATGTCGACGTACATCGAGTTTGTGGCGGATCGGCTGCTGGTGGCACTTGGCAACG-A 737 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 ||| ||| || | || |||||||| || || ||||| |||||||| ||| | || || Sbjct 738 GCGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATTTCACTGCAGGGAAA 797 Query 61896 GACGAATTTTTTCGAGAA 61913 ||| || || || ||||| Sbjct 798 GACAAACTTCTTTGAGAA 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425086106800