Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq5240 973 0.0 seq13611 372 1e-98 seq8220 203 1e-47 seq10087 89.7 2e-13 >seq5240 Length=752 Score = 973 bits (1078), Expect = 0.0 Identities = 579/604 (96%), Gaps = 1/604 (0%) Strand=Plus/Minus Query 4483 TTGCTTTTTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4542 |||| | |||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 604 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 545 Query 4543 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4602 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 485 Query 4603 TGCCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATAC 4662 ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 484 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 425 Query 4663 AGTCTGGTAGTTCAGGCGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCAATTTC 4722 || ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 424 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 365 Query 4723 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 4782 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 364 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 305 Query 4783 CTTGAGGGTGAATGCGAACAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 4842 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 245 Query 4843 CATGTTCATCGCTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 4902 ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 244 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 185 Query 4903 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 4962 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 125 Query 4963 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTT-TTTTGATTTCAGAATTAGCCTG 5021 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 124 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 65 Query 5022 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5 Query 5082 GCAA 5085 |||| Sbjct 4 GCAA 1 Score = 122 bits (134), Expect = 3e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4203 CCAACCGTAAGCGCAATCCCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 4262 || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 752 CCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTT 693 Query 4263 CTTTCCCGTTCATCCAGAAGCGCCAGCGCA 4292 ||||||||||||||||| || ||||| || Sbjct 692 CTTTCCCGTTCATCCAGCAGTTCCAGCACA 663 >seq13611 Length=919 Score = 372 bits (412), Expect = 1e-98 Identities = 298/357 (83%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 26124 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 26183 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 566 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 625 Query 26184 CTGGAACAGGCGAATGCCACCATTACTGGCATGCAGGTGCGCCAGCGTGATGTTGCTGCG 26243 ||| | | |||||| || | ||||||| ||||||| |||| |||||||||||||||||| Sbjct 626 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGTCAGCGTGATGTTGCTGCG 685 Query 26244 CTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 26303 ||||||||||||||| ||| ||||||||| ||||| | |||||||||||| |||||||| Sbjct 686 CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCTAAAGCTGAAAATGATGCTCTGCGT 745 Query 26304 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAACGCCACCTGCTCCGGTACCGTG 26363 | ||||||||||||||||||| || ||| ||||| || ||| || | | ||| Sbjct 746 GATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG-TCAG--TCAGTG 802 Query 26364 CGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACC 26423 |||||||||||| | |||||||||||||||||||| || ||||||||||||||||||| Sbjct 803 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACC 862 Query 26424 GCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26480 ||||||||||||||||||| ||||||||| || |||| || ||||| || || ||| Sbjct 863 GCTGAACGGGATTATTTCACCCTCAGAGAGAGGCTGATCACTATGCAAAAACAACTG 919 >seq8220 Length=837 Score = 203 bits (224), Expect = 1e-47 Identities = 257/351 (73%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 48023 ACGAAAGACGGCATTCCCTATGTGGCCGGGATTGGTGCAGGGATTGAGGATACTGATGGC 48082 || |||||||||| | ||||| || || ||||| | || ||||| || || || Sbjct 418 ACCAAAGACGGCAAACATTATGTCGCGGGTATTGGCCTCAGCATGGAGGACACGGA-GGA 360 Query 48083 CAGCCA-CTGAGCAACATACTGCTGCTGGCTGACCGTATCGCGATGATAAATCCGGAGAG 48141 || | |||||| | | ||| | || | |||||||| | || | |||| | Sbjct 359 AGGCAAACTGAGCCAGTTTCTGGTTGCCGCCAATCGTATCGCATTTATTGACCCGGCAAA 300 Query 48142 CGGCAACAGCACGCCGTTATTTGTGGCGCAGGGGAATCAGCTGTTCATGAACGACGTGTT 48201 ||| || |||||| | |||||||||||||| || ||| | ||||||||||||||||| Sbjct 299 CGGGAATGAAACGCCGATGTTTGTGGCGCAGGGCAACCAGATATTCATGAACGACGTGTT 240 Query 48202 CCTGAAGCGACTGTTTGCGGTGAGTATCACCTCGTCCGGCAATCCCCCGACGTTTTCCCT 48261 ||||||||| ||| || | || ||| ||||||||| ||| | |||||||| Sbjct 239 CCTGAAGCGCCTGACGGCCCCCACCATTACCAGCGGCGGCAATCCTCCGGCCTTTTCCCT 180 Query 48262 GACGCCGGACGGGCGACTGACGGCGAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAA 48321 ||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 179 GACACCGGACGGAAAGCTGACCGCTAAAAATGCGGATATCAGTGGCAGTGTGAATGCGAA 120 Query 48322 CTCAGGGACGCTCAACAACGTCACGATTAATGAGAACTGTCAGATTAAGGG 48372 ||| |||||||||| || || ||||| ||| |||||| ||| || || Sbjct 119 CTCCGGGACGCTCAGTAATGTGACGATAGCTGAAAACTGTACGATAAACGG 69 >seq10087 Length=869 Score = 89.7 bits (98), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 11927 TCACAAAGAAAAAATCCCCGGCTGCCACCGAGGATTTTAAGCAAATTGATATGCAATTCT 11986 |||| || |||||| |||||| || |||||| || | | ||||| | ||| | |||| Sbjct 571 TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT 512 Query 11987 GAGGGAATTACTGGATCAATCCACAGGAGTAATTATGACAAA 12028 |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct 511 GAGGTCATTACTGGATCTATCAACAGGAGTCATTATGACAAA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175484114605020