Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq13611 123 7e-24 >seq13611 Length=919 Score = 123 bits (136), Expect = 7e-24 Identities = 267/397 (67%), Gaps = 13/397 (3%) Strand=Plus/Plus Query 6081 AAGGCGTTTCTTGACATGCTGGCGTACAGTGAAGGCACGGATAACGGGCGACAGAAAACC 6140 ||||||||||| || |||||||||| || || || |||||||| || ||||||||| Sbjct 48 AAGGCGTTTCTCGATATGCTGGCGTGGTCGGAGGGAACTGATAACGGACGTCAGAAAACC 107 Query 6141 AATAATCATGGCTATGACGTGATTGTCGGCGGTTCGCTGTTTACCGACTATTCCGATCAC 6200 | |||||||| |||||||| ||||| ||||| ||| ||||| || || ||||||||| Sbjct 108 AGAAATCATGGTTATGACGTCATTGTAGGCGGAGAGCTATTTACTGATTACTCCGATCAC 167 Query 6201 CCGCGCAAGCTGATTAGCCT---GCCTAAGCTGGGCATCAAGTCCACTGCCGCCGGGCGC 6257 || ||||| || | | || || || | |||| || || | |||||| ||| Sbjct 168 CCTCGCAAACTTGTCACGCTAAACCCAAAAC------TCAAATCAACAGGCGCCGGACGC 221 Query 6258 TATCAGGTGCTGGCTAAGTTTTATGACGCGTACAAAAAGCAACTGCACCTGCCTGACTTC 6317 || ||| | || | | | || || ||| ||||| || |||| |||||| Sbjct 222 TACCAGCTTCTTTCCCGTTGGTGGGATGCCTACCGCAAGCAGCTTGGCCTGAAAGACTTC 281 Query 6318 TCCCCCGCATCGCAGGACGCTATTGCAATGCAGCTAATCCGCGAATGCAAAGC--CACCG 6375 || || | ||||||||| | ||| |||||| || || | || ||| Sbjct 282 TCTCCGAAAAGTCAGGACGCTGTGGCATTGCAGCAGATTAAGGAGCGTGGCGCTTTACCT 341 Query 6376 CTGATATTGAGGCTGGTCGCATTGCTGATGCTATCCATAAATGCCGCTCCCGCTGGGCTT 6435 || ||||| |||| || | | || ||| | ||| || |||||||| Sbjct 342 ATG--ATTGATCGTGGTGATATCCGTCAGGCAATCGACCGTTGCAGCAATATCTGGGCTT 399 Query 6436 CATTGCCGGGCGCTGGTTATGGTCAGCATGAGCAGAA 6472 || ||||||||||||||||||||||| ||||| || Sbjct 400 CACTGCCGGGCGCTGGTTATGGTCAGTTCGAGCATAA 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144922022823760