Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20[genbank_20GCA_5F000209065.1_202005-08-02] 29,495 sequences; 89,937,456 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq479 93.3 6e-14 seq638 84.2 3e-11 >seq479 Length=119321 Score = 93.3 bits (102), Expect = 6e-14 Identities = 252/386 (65%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||| || |||||||| ||||| || || || |||||| || |||| || | Sbjct 1193 TCTACCAGGCAAGCACCAGCGAGCTCTACGGCAAGGTGCAGGAGGTGCCGCAGACGGAGA 1134 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 || || | | || || ||| || | || || || || || | || ||||||| Sbjct 1133 AGACGCCCTTCCACCCGCGCAGCCCGTACGCGGTGGCGAAGCTGTACGCCTTTTGGATCA 1074 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 |||||| | || || | || ||| | | ||| ||||| ||||| |||| Sbjct 1073 CAGTGAACTACCGTGAGTCGTACGGTATGTTTGCGTGCAACGGCATTCTGTTCAACCACG 1014 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAA 162694 | |||| | || | |||||| || || ||||| || || || | || | Sbjct 1013 AGTCGCCACGACGCGGCGCGACGTTTGTGACGAAGAAGATAGTGCGGGCTGCGGTGCGCA 954 Query 162695 TTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGG 162754 | | ||| || || | || || | ||||| ||| | ||||||| |||||||||| Sbjct 953 TCAAGAAGGGTCTGCAGAAGGAGCTGCTTCTTGGCAACGTGAATGCCCTGCGTGACTGGG 894 Query 162755 GACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATG 162814 | ||||| || |||||||| | | |||||| | ||||| ||| |||||||| || | Sbjct 893 GGCACGCGAAGGACTACGTGCACGGCATGTGGCTCATGCTGCAGGCGGAGAAGCCTGACG 834 Query 162815 ATTATGTGATCGCAACTGGTGAGCAG 162840 | | ||| | || || || |||||| Sbjct 833 ACTGGGTGCTGGCGACGGGCGAGCAG 808 >seq638 Length=990720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| ||||| ||||| ||||| |||| | || | |||||| || || ||||| Sbjct 792754 CGGCATTCTGTTCAACCACGAGTCGCCACGACGCGGCGCGACGTTTGTGACGAAGAAGAT 792813 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 || || || | || || | ||| || || | || || | ||||| ||| | Sbjct 792814 AGTGCGGGCTGCGGTGCGCATCAAGAAGGGTCTGCAGAAGGAGCTGCTTCTTGGCAACGT 792873 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 ||||||| ||||||||||| ||||| || |||||||| | | |||||| | ||||| Sbjct 792874 GAATGCCCTGCGTGACTGGGGGCACGCGAAGGACTACGTGCACGGCATGTGGCTCATGCT 792933 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAG 162840 ||| |||||||| || || | ||| | || || || |||||| Sbjct 792934 GCAGGCGGAGAAGCCTGACGACTGGGTGCTGGCGACGGGCGAGCAG 792979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691204267636200