Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq253 181 8e-41 >seq253 Length=51549 Score = 181 bits (200), Expect = 8e-41 Identities = 584/893 (65%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || |||| ||||||||| |||| ||| | || || ||| |||| | ||| Sbjct 30585 GAACCGCTTTTGCGTGAGAATCCTGACCGTTACGTGATCTTTCCGATCAAGTACCATGAT 30526 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| | |||||| | || || ||| | | ||||||||||||||| ||||||| Sbjct 30525 ATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCAT-CTGGACGGTGGAGGAAATCGATTT 30467 Query 61146 GTCCAAAGACATGAATGACTGGGAGC-GTTTATCGA-GCGGTGAACAACATTTCATTAAA 61203 | || ||| || ||||||||| | | | ||| | || ||| | || || || Sbjct 30466 GAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTT--ATCAAG 30409 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| |||||||||||||||| || || || || ||||| | | | || Sbjct 30408 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGG 30349 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | ||| || ||||| |||||| ||| || |||||||| |||||||||||||| Sbjct 30348 TTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATT 30289 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| || || ||||| | ||| || || | ||||||||||||| || || | Sbjct 30288 GAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAG 30229 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || |||| | ||||| ||| || ||| | || || || | Sbjct 30228 GAGAAGGACCGCATGTTGCACGCCATTTCGACAATTCCGTGCATCCAGAAAAAGGCCAAC 30169 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 ||||| | |||||| ||| || | | | | |||| ||||| | | || ||| Sbjct 30168 TGGGCGATTCGGTGGATCCGCAG--CAGCAG-TTCGTTTGCCGAACGCCTTGTTGCCTTT 30112 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 |||| ||| || ||| | || || || || || || | || ||| | ||||| Sbjct 30111 GCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAG 30052 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 ||||| || |||||||| ||||| ||||| ||||| | || || || || || ||| || Sbjct 30051 CGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTG 29992 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 || || ||||| || | | | || ||| | ||||| | | |||| Sbjct 29991 CACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAACAAGCTACCAACGGAG 29932 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACG 61741 ||| | | |||||| || | ||||| || || | || || |||| |||| Sbjct 29931 CGTATTCGCGAGATTATTTGCAGTGCGGTGGACATTGAGCGTGAGTTCATCTG--TGACT 29874 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | | || || || | || ||||| | | |||||| ||| || || |||| Sbjct 29873 CCATCCCTGTGCGGCTGCTGGGGATGAACGCAGATTTGATGTCGACGTACATAGAGTTTG 29814 Query 61802 TTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || || || ||| |||| | | |||| | | |||| ||| || | || |||||| Sbjct 29813 TGGCGGATCGGCTGCTGGTGGCACTTGGCAACG-AGCGTCACTACAACTCAAAGAACCCA 29755 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || || || ||||| ||||| || ||| | || ||||| || || || ||||| Sbjct 29754 TTCGACTTTATGGAAATGATCTCACTGCAGGGAAAGACAAACTTCTTTGAGAA 29702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563009279200