Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq839 87.8 2e-12 >seq839 Length=1084952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 251/386 (65%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||| || |||||||| ||||| || || || |||||| || |||| || | Sbjct 132740 TCTACCAGGCAAGCACCAGCGAGCTCTACGGCAAGGTGCAGGAGGTGCCGCAGACGGAGA 132681 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 || || | | || || ||| || | || || || || || | || ||||||| Sbjct 132680 AGACGCCCTTCCACCCGCGCAGCCCGTACGCGGTGGCGAAGCTGTACGCCTTTTGGATCA 132621 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 |||||| | || || | || ||| | | ||| ||||| ||||| |||| Sbjct 132620 CAGTGAACTACCGTGAGTCGTACGGTATTTTTGCGTGCAACGGCATTCTGTTCAACCACG 132561 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAA 162694 | |||| | || | |||||| || || ||||| || || || | || | Sbjct 132560 AGTCGCCACGACGCGGCGCGACGTTTGTGACGAAGAAGATAGTGCGGGCTGCGGTGCGCA 132501 Query 162695 TTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGG 162754 | | ||| || || | || || | ||||| ||| | ||||||| |||||||||| Sbjct 132500 TCAAGAAGGGTCTGCAGAAGGAGCTGCTTCTTGGCAACGTGAATGCCCTGCGTGACTGGG 132441 Query 162755 GACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATG 162814 | ||||| || |||||||| | | |||||| | ||||| ||| |||| ||| || | Sbjct 132440 GGCACGCGAAGGACTACGTGCACGGCATGTGGCTCATGCTGCAGGCGGAGAGGCCTGACG 132381 Query 162815 ATTATGTGATCGCAACTGGTGAGCAG 162840 | | ||| | || || || |||||| Sbjct 132380 ACTGGGTGCTGGCGACGGGCGAGCAG 132355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 250/386 (65%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||| || |||||||| ||||| || || || |||||| || |||| || | Sbjct 138159 TCTACCAGGCAAGCACCAGCGAGCTCTACGGCAAGGTGCAGGAGGTGCCGCAGACGGAGA 138100 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 || || | | || || ||| || | || || || || || | || ||||||| Sbjct 138099 AGACGCCCTTCCACCCGCGCAGCCCGTACGCGGTGGCGAAGCTGTACGCCTTTTGGATCA 138040 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 |||||| | || || | || ||| | | ||| ||||| ||||| |||| Sbjct 138039 CAGTGAACTACCGTGAGTCGTACGGTATTTTTGCGTGCAACGGCATTCTGTTCAACCACG 137980 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAA 162694 | |||| | || | |||||| || || ||||| || || || | || | Sbjct 137979 AGTCGCCACGACGCGGCGCGACGTTTGTGACGAAGAAGATAGTGCGGGCTGCGGTGCGCA 137920 Query 162695 TTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGG 162754 | | ||| || || | || || | ||||| ||| | ||||| | |||||||||| Sbjct 137919 TCAAGAAGGGTCTGCAGAAGGAGCTGCTTCTTGGCAACGTGAATGCTCTGCGTGACTGGG 137860 Query 162755 GACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATG 162814 | ||||| || |||||||| | | |||||| | ||||| ||| |||| ||| || | Sbjct 137859 GGCACGCGAAGGACTACGTGCACGGCATGTGGCTCATGCTGCAGGCGGAGAGGCCTGACG 137800 Query 162815 ATTATGTGATCGCAACTGGTGAGCAG 162840 | | ||| | || || || |||||| Sbjct 137799 ACTGGGTGCTGGCGACGGGCGAGCAG 137774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691450297462800