Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1368 116 5e-24 >seq1368 Length=2263 Score = 116 bits (128), Expect = 5e-24 Identities = 173/238 (73%), Gaps = 17/238 (7%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||| ||||||||||| | || |||| ||| | | || || ||||||||||||| Sbjct 268 CACTGGGCAGGCGTCGGCCCCAGTACAAACCCTTTCGGGCTA-GCTGGGACCTGTGTTTT 326 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 || |||||||||| ||| ||| || |||||||| | | | ||| ||| Sbjct 327 TATTAAACAGTCGGGCCCCCCTAGTCACTGCGACCTGCGG--GTT----ACG-----CAC 375 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT-CCTTAACCAC 192 | |||| ||||||||||||||||||||||||||||| |||||||| || ||| || Sbjct 376 CCGCAG--GCACCCCTTCTCCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCCTCGGCCGG 433 Query 193 AGTTCACCCGA-ACGCCTTAGTATTCTCTACC-TGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||| ||||||||| ||||| || | |||||||||||||| ||||| Sbjct 434 GTTTCCCCCGACACGCCTTAGGCTTCTCACCCAGGGGCACCTGTGTCGGTTCTCGGTA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386371098