Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1368 172 1e-40 >seq1368 Length=2263 Score = 172 bits (190), Expect = 1e-40 Identities = 255/359 (71%), Gaps = 32/359 (9%) Strand=Plus/Plus Query 34 TTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGA 93 |||| | | | | ||| || ||||||| | | |||||||||||||| |||||||||| Sbjct 110 TTTCGCCGGGCCCCGGCCGGGGACAGCGGGGACCTCGTTACGCCATTCATGCAGGTCGGC 169 Query 94 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACC 153 | ||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 170 ATTTAACCGACAAGGAATTTCGCTACCTTAAGAGGGTTATTGTTACCCCCGCCGTTTACC 229 Query 154 GGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGG 213 || ||||| | | || ||| |||| | || || | ||||||| ||| Sbjct 230 GGTGCTTC-ACC--------CG-GTT---GTACCCGGGC--TTCACATACCGGCACTGGG 274 Query 214 CAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAAC 273 |||||||| ||| ||| | |||||| | | || | | ||||||||||| ||||| Sbjct 275 CAGGCGTCGGCCCCAGTACAAACCCTTTCGGGCTAGCTGGGACCTGTGTTTTTATTAAAC 334 Query 274 AGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTC 333 ||||| | ||| || || ||||| || | ||||| ||||| | Sbjct 335 AGTCGGGCCCCCCTAGTCACTGCGACCTGC---GGGTTACG------------CACCCGC 379 Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTT 392 | ||| | ||||||||||||||||||| ||| |||||| |||||| || ||| ||| Sbjct 380 A--GGCACCCCTTCTCCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCCTCGGCCGGGTT 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260774456192