Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1368 102 2e-19 >seq1368 Length=2263 Score = 102 bits (112), Expect = 2e-19 Identities = 268/400 (67%), Gaps = 32/400 (8%) Strand=Plus/Plus Query 24 TTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGGCG 83 |||||||| |||| ||||| ||| ||| | | | || ||||||||| | ||||| Sbjct 753 TTAGGACC-GACTAACCCACGGCTGACGACCATTGCCGTGGAACCCTGGCCCCTCCGGCG 811 Query 84 GACGGGATTCCCACCCGTC-ACAC-GCTACTCATGCCTGCATTCTCACTCGCATCAACTC 141 | |||||||| |||||| | || | ||||||| | | | || | | | | | ||| Sbjct 812 GTCGGGATTCTCACCCGACTACGCTGCTACTCCCGGCAGGATCCGCGATACCGGCGGCTC 871 Query 142 CACCACACAGTCA--CCCGGCAGCTTCACCACTGACACGACGCTCCCCTACCCAACCACA 199 |||| || | |||||| || | |||| | |||| | | ||||||| | ||| Sbjct 872 CACCGGACCTTACGGCCCGGCTTCTACGCCACCGGCACGCC---CGCCTACCCGATCACG 928 Query 200 CA------GGTT-----GCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGG 248 | ||| ||| | ||||||| ||| ||||||| | |||| |||| Sbjct 929 GACCAATCGGTCCGTGCGCCGGGGTCTCGGCGGCCGGCTTGAGCCCCG-TCCATTTTCGG 987 Query 249 CGC---GGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCA 305 || ||| || ||| ||||||| ||||||||||||| ||||||||||||||| | Sbjct 988 GGCCCCGGAC---CTCGACGGGTGAGCTGTTACGCACTCTTTAAAGGATGGCTGCTTCTA 1044 Query 306 AGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT-----TCCCACTGAGTCACCAC 360 |||| |||||| | |||||| | | ||| |||| | |||| || | ||| Sbjct 1045 AGCCTACCTCCCCGCTGTCTAAGGCCCGGGACACCCTTTGGAGTAACACTTAGCCGGCAC 1104 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||||||| | | |||||| |||| |||||||| Sbjct 1105 TTTGGGGCCTTAAC-CCCGGTCTGGGTTGTTCCCCTCTCG 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177576141824