Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq536 134 3e-29 >seq536 Length=1527 Score = 134 bits (148), Expect = 3e-29 Identities = 263/384 (68%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 ||| |||| ||||||||||||| || | || | | || |||| ||||| |||| Sbjct 400 GTGGCAGCCGCCGCGGTAATACCGGCGGCCCGAGTGGTGGCCACTATTATTGGGCCTAAA 341 Query 90 GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACT-G 148 | | ||||| || | |||||| || |||| | | ||||||||| ||| || | Sbjct 340 GCGGCCGTAGCCGGGCCCGTAAGTCCCTGGCGAAATCCCACGGCTCAACCGTGGGGCTCG 281 Query 149 CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTG 208 || || ||||| || || | | | |||| ||| | || | || | |||| |||| Sbjct 280 CTGGGGATACTGCGGGCCTTGGGACCGGGAGAGGCCGGGGGTACCCCCGGGGTAGGGGTG 221 Query 209 AAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGA 268 |||| | || || ||| | ||||||||||||||| | |||||| | | || Sbjct 220 AAATCCTATAATCCCGGGGGGACCGCCAGTGGCGAAGGCGCCCGGCTGGAACGGGTCCGA 161 Query 269 CACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGT 328 | ||||| |||| || ||||||| ||| ||||||||||||| |||||||| || || Sbjct 160 CGGTGAGGGCCGAAGGCCAGGGGAGCGAACCGGATTAGATACCCGGGTAGTCCTGGCTGT 101 Query 329 AAACGATGAATACTAGGTGTCGGG-GCGCATAAGTGCT---CCGGTGCCGCAGCAAACGC 384 ||| |||| |||||||||||| | || | | ||| ||||||||| || || | Sbjct 100 AAAGGATGCGGGCTAGGTGTCGGGCGAGC-TTCGAGCTCGCCCGGTGCCGTAGGGAAGCC 42 Query 385 AATAAGTATTCCACCTGGGGAGTA 408 |||| || ||||||||||| Sbjct 41 GTTAAGCCCGCCGCCTGGGGAGTA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203175623168