Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1897 370 3e-100 seq1368 91.5 5e-16 >seq1897 Length=1228 Score = 370 bits (410), Expect = 3e-100 Identities = 301/363 (83%), Gaps = 4/363 (1%) Strand=Plus/Minus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 ||||||| ||||| || |||| | | || ||||||||||| ||| || || Sbjct 453 CTTCATTCGATAAGTGAAGCAACGTTCCGAGTGGTGGTATTTCATTTGAGCTTGC---GC 397 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 | |||| ||| ||||||||| ||||| |||| || | |||| ||||||| |||||| Sbjct 396 TTCCACCTATACTACACCTCCAAAGTCGCCGCACAGAGCCAGACTGGAGTCAAACTCAAC 337 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||| | || |||| ||||||||||| |||| ||||||||||| Sbjct 336 AGGGTCTTCTTTCCCCGCTTAGCCCTTCAAGTCCGTTCCCTTGACTGTCGTTTCGCTAGA 277 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| | ||||||| ||||||||| |||||||||||||||||||| |||||| || || Sbjct 276 TAGTAACTCGGGACAGAGGGAATCTCATTAATCCATTCATGCGCGTCTCTAATTGGAAGA 217 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 216 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCGTCGG 157 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA-ACATCA 536 ||||| || |||| ||||||||||||||||||||||||||||| ||||| || || || Sbjct 156 TGAATCTCGTCACGTTGACATTCAGAGCACTGGGCAGAAATCAGTTTGCGACATCCACCA 97 Query 537 CTT 539 ||| Sbjct 96 CTT 94 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || || ||||||||||||| | |||| | |||||||||||||||||| | Sbjct 805 CTTGTGTTCCACGTGAGATTTCTGTTCCCACTGAGCTCGCCTTAGGACACCTGCGTTGTC 746 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA-ATGTC 113 || |||||||| ||||||||||||||||||||||| ||| || ||||| Sbjct 745 GTGTAACAGATATGCCGCCCCAGCCAAACTCCCCATCTGGCAGATGTC 698 >seq1368 Length=2263 Score = 91.5 bits (100), Expect = 5e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||| ||| | ||||||| |||||||||| ||| | ||| ||| ||| ||| Sbjct 129 GGGACAGCGGGGACCTCGTTACGCCATTCATGCAGGTCGGCATTTAACCGACAAGGAATT 188 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 | ||||||||||||| || || ||||| ||||||||||||| | |||| Sbjct 189 TCGCTACCTTAAGAGGGTTATTGTTACCCCCGCCGTTTACCGGTGCTT 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635166870848