Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq763 242 3e-59 seq1878 145 6e-30 >seq763 Length=1889 Score = 242 bits (268), Expect = 3e-59 Identities = 585/873 (67%), Gaps = 17/873 (2%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTG 61124 ||||| ||| |||| || || |||| | |||||| ||||||| ||| | | ||| Sbjct 1471 TTCCCTATCAAGTACCCTGACATATGGCAGAAGTACAAGGAGGCGGAGAGCAGCAT-CTG 1413 Query 61125 GACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCG 61183 |||||||||||| |||| | || ||||||| || |||||| | | ||| || Sbjct 1412 GACGGTGGAGGAAATCGACCTTGGGAATGACATGACAGATTGGGAGAAGCTGGACGA-CG 1354 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | ||| ||||| |||||||||||||| ||||| || || || || || || Sbjct 1353 GCGAGCGACACTTCATCAAACATGTGTTGGCTTTCTTCGCGGCAAGCGATGGCATTGTGC 1294 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||| | |||||| ||| | || ||||| || | || | || ||||||| Sbjct 1293 TGGAGAACCTTGCGGAACGGTTCATGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCT 1234 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | || ||||||||||| ||||| ||| |||| || |||| ||| || | ||||||| Sbjct 1233 ATGGGTTCCAGATTGCTATGGAAAATATCCATTCTGAGACATACTCCGTGTTGATCGATA 1174 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 |||| | ||| | | ||| ||||| || | ||||||| |||||| ||| Sbjct 1173 CGTATGTTGTGGATCCCGACGAAAAGCAACGACTGCTACATGCCATAAGGACGATTCCGT 1114 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 | || || || | ||||| | | ||||| |||| || | || | || Sbjct 1113 GTATTGAGAAAAAGGCCAAATGGGCGATTGAATGGATTGGCAGT-CA--GACTTCGTTCC 1057 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 | || | | || ||||||| ||||| || |||||||| ||| ||||| || Sbjct 1056 CTACGCGGCTCGTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCG 997 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | || |||||||| ||||| ||||| | |||||||| || ||||||||||| ||| ||| Sbjct 996 CCATTTTTTGGTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGA 937 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACG----CTAT 61659 | ||||| || ||||| |||| ||| ||||| || ||||| | ||| ||| Sbjct 936 TTTCACGTGATGAGGGTCTGCACACTGACTTTGC---TTGCCTATT-ATACGAGAAGTAT 881 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 | || || | | || ||| |||||| ||| ||| | | | || ||| | || Sbjct 880 ATCGTAAACAAGCTGCCGAGGGATCGTGTGCTTGAAATTATATGCAATGCAGTATCAATT 821 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 || | || || | || || || || ||| | || || ||||||| | || Sbjct 820 GAGCGAGAGTTCATTTGCGATGCATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTG 761 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGT-CGATTTGGGTATGAAGCG 61838 ||| | ||||| ||||| ||||| ||||| || || |||| || ||||| | | || Sbjct 760 ATGACTCAGTACATTGAGTTTGTCGCCGATCGGCTCCTGGTGTCCTTGGGGTACG-ACCG 702 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 || || |||| ||||||||||| |||||||| |||||||| || | || || || Sbjct 701 TCATTACAACTCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAAC 642 Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || ||||||||||| || || || ||||| Sbjct 641 TAACTTTTTCGAGAAGAAGGTTGGTGAGTATCA 609 >seq1878 Length=84023 Score = 145 bits (160), Expect = 6e-30 Identities = 376/573 (66%), Gaps = 0/573 (0%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||||| ||| || |||||||| || || | |||||| | || ||||||||| Sbjct 21413 GGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGAAGTGTACTCGACA 21472 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| ||||||| ||| ||| || ||||| | ||| | |||||| |||| | Sbjct 21473 ATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAA 21532 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 || |||||||||||||| | ||| | ||| || || || || || ||||||| ||| Sbjct 21533 TTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTCAAGGATA 21592 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 | ||| || | | |||| | || | ||| | | ||||| | ||| || | Sbjct 21593 AGGAACCACAGTTCCTGGGCCTGAATAGTTCTTACGCCACGACCTTCCCTTTCATATCGC 21652 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 || || | | || || || | || || | | || | ||| || Sbjct 21653 TCATATAAATCAGTAAACTCTTGGCCATAACAGTCACTCAAAAAGGGGGCCGTGTTGGGG 21712 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||| |||| |||| |||| || || || |||||| || ||||| ||||| Sbjct 21713 TCCATAAGCGTCCAAGTCCCATGACTCTCAACTCGTTCCATAAACAGGTCAGGAATCCAC 21772 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 || |||| || | || || || || || ||||| |||| |||||| || | Sbjct 21773 AGACCGTAAAACAAGTCCCGCGCACGCTGATCCTCCTTGCCCGTATTTTTCTTCAGAAGG 21832 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 ||||| ||||||| || || ||||| || |||| || || || || | |||| | || Sbjct 21833 AGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATAAATAGCAAAGGCGCCCTTGCGC 21892 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||||| || || ||||| || |||||||| || || | ||||| | ||| || || Sbjct 21893 TTGCCACCGCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGGACC 21952 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 || || || || | ||||| || ||| ||||| Sbjct 21953 AGACCATTCGACGTACCATTTGTCCCGGCGATG 21985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558183300640