Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq589 141 3e-31 >seq589 Length=10949 Score = 141 bits (156), Expect = 3e-31 Identities = 118/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||| ||||||||||||||||||| ||| | || |||||||| |||||||||||||| Sbjct 8810 ATTGGGCAATTTGCGCGCCTGCTGCCCTCCGTAGAAGTGGTAGCTATTTCTCAGGCTCCC 8869 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||||||||||||||||||| ||||| | ||||| | |||||| || |||||| | Sbjct 8870 TCTCCGGAATCGAACCCTAATCCCCCGCT-CCCGTCAACGCCATGGCAGTCCACTACACG 8928 Query 193 ACCATCGAAAGTTGATAGGGCAG 215 ||||| | ||||||||||| Sbjct 8929 GCCATCACTGGCTGATAGGGCAG 8951 Score = 80.6 bits (88), Expect = 8e-13 Identities = 78/97 (80%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCAT 467 ||||| ||||||||||| ||||| ||| ||| | | | || || || || ||||||| Sbjct 9197 CTGATGTAATGAGCCATGCGCAGATTC-CTGCAATGCAGTGATT---CTGAGGCATGCAT 9252 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| | || |||| |||||||||||||||||||||| Sbjct 9253 GGCTAAGTCCTTGAAACAAGCATATGACTACTGGCAG 9289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510356636416