Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq78 253 2e-62 seq62 107 2e-18 >seq78 Length=36107 Score = 253 bits (280), Expect = 2e-62 Identities = 581/857 (68%), Gaps = 21/857 (2%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA-AGCTTCCTTCTG 61124 ||||| ||| || | | || || ||| | |||||| ||||||| ||| | | ||| Sbjct 13708 TTCCCAATCAAGCACCACGACATCTGGAAGAAGTACAAGGAGGCGGAGAGCAGCAT-CTG 13650 Query 61125 GACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCG 61183 ||| ||||||||| | || || ||| ||||||| || |||||| | | | ||| || Sbjct 13649 GACAGTGGAGGAGATTGACCTGGGCAATGACATGACGGATTGGGAGAAGCTGAACGA-CG 13591 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| || || |||||||| || |||||||| || || ||||| Sbjct 13590 GGGAGCGGCACTTCATCAAGCACGTGTTGGCATTTTTTGCCGCAAGTGATGGGATCGTGC 13531 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||| | | || ||| | ||||||||| |||||| ||| || |||| Sbjct 13530 TGGAGAACCTGGCACAGCGGTTCATGACGGAGGTGCAGTCACCGGAGGTGCGCTGCTTCT 13471 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | || |||||||| ||||| ||||| || ||||| ||||||||| |||||| | || | Sbjct 13470 ATGGGTTCCAGATCGCCATCGAGAACGTGCACTCTGAGATGTACTCTGTTCTGCTGGACA 13411 Query 61364 CGTACATCAGGGAG-CGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 | ||||||| ||| | | || || | || || ||||| | |||||| || || ||| Sbjct 13410 CTTACATCACGGACACAGTCGAAAAG-GACCGCTTGTTTCACGCCATCTCAACTATCCCG 13352 Query 61423 -GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATT 61481 || ||| | |||||| | ||||| || |||||| ||| || || | || Sbjct 13351 TGCATTGA-GAAGAAAGCTAAGTGGGCAACTAAGTGGATCCGCAG--CAGCGAGTGT-TT 13296 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 || ||| || | | || ||||| | || ||||| | || ||| || ||||| Sbjct 13295 TGCTGAGCGCCTTGTCGCGTTTGCCGCTGTTGAGGGCATCTTCTTCTCCGGCTCGTTCTG 13236 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||| | || ||| | ||||| ||||| || ||||| || ||||| ||||||||||| | Sbjct 13235 CGCGCTGTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGGCTGACGTTCAGCAATGAACT 13176 Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTC---AAACGCTA 61658 || || |||||||||||| |||| ||| ||||| |||||| | |||| | Sbjct 13175 CATTTCGCGCGACGAGGGCCTGCACACTGACTTTGCATGCCTGCTATACGAAAAACACAT 13116 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | | ||| | |||| || |||||| | ||||| | |||||||| | || Sbjct 13115 TGTCCAGAAGCTTCCG-CG--TGAGCGTATTCAAGAGATCATCTGTGAGGCGATGGAGAT 13059 Query 61719 CGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||| | || || |||| || || | || || || || || ||||| | | Sbjct 13058 CGAGCGTGAGTTCATCTG--CGATGCGATCCCGGTGCGCCTGATTGGGATGAACTCGGAC 13001 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAG 61836 || |||||| || ||||| || ||||| ||||| ||| | || | | || | || Sbjct 13000 CTGATGTCGACATACATTGAGTTCGTTGCGGACCGGCTGCTCGTGGCGCTCGGAAACGAG 12941 Query 61837 CGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 ||| ||| || |||| ||||| || ||||||||||| ||||| |||||| | || ||| Sbjct 12940 CGGTACTACAAGTCGAAGAACCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGAAAG 12881 Query 61897 ACGAATTTTTTCGAGAA 61913 ||||| || || ||||| Sbjct 12880 ACGAACTTCTTTGAGAA 12864 >seq62 Length=39022 Score = 107 bits (118), Expect = 2e-18 Identities = 331/508 (65%), Gaps = 12/508 (2%) Strand=Plus/Plus Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAG 66353 |||||||| ||| |||| ||| | ||| || ||| ||||| ||| || || |||| Sbjct 15315 TGTGTGGATCCATAAGCGTCCAGTTTTCATGCTTTTCCACACGCTCCATGAAAAGGTCAG 15374 Query 66354 GTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGC 66413 | | ||| || |||||||||||||| || || || || || | || ||| || | Sbjct 15375 GAACCCACAGCGCGTAGAAGAGATCACGCGCACGCATATCTTCCTTACCCGTATTCTT-C 15433 Query 66414 GCAAGTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAG 66472 ||| | || || | | ||||||| ||||||| || || ||||| || |||| || Sbjct 15434 TTAAGAAGAAGAAAGTTCATGATGTCGCCATGCCAAGGCTCTAGGTAAATTGCGATCGCA 15493 Query 66473 CCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAAC 66532 ||| | || | ||||| ||||| || || || || || ||| || | ||||| | | Sbjct 15494 CCCTTGCGCCTACCGCCGCCTTGATCCACATAACGTGCCGTATTATTCCACACACGTAGC 15553 Query 66533 ATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGAT-CCTCGTGCC-- 66589 || || || || ||||| ||| | || || || || | || || ||| | | Sbjct 15554 ATTGGCACAAGGCCGTTGGATGTACCGTTCGTTCCCGCAAT-----ATAACTCCCGGCAC 15608 Query 66590 --CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 || || | |||||| | | || |||||||| |||| || ||| || || | Sbjct 15609 AGCGGATGTTGTGAACGTGGATGCCGATACCACCAGCCGATTTGCTGATTATGGCGCACT 15668 Query 66648 CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | || | | ||||| |||||| |||| || || | | ||| |||| | Sbjct 15669 GCTTTAGGGTGTCGTAGATGCCCTCAATGCTGTCATCCCGCATTGCAACAAGGAAGCAAG 15728 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767 | || | || ||| |||||| | || ||| || || ||||| |||||||||||| Sbjct 15729 AGCTCATCTGTGGTACTGGTGTGCCAGCGTTGAACAGTGTCGGTGTTGCGTGCGTAAAGA 15788 Query 66768 AATGGCGAGACATGTAATTGTACGTCTC 66795 | ||||||| |||| ||| || || Sbjct 15789 AGCCAAGAGACATATAATCGTATGTTTC 15816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 ||||||| ||| ||| || ||||| ||||||||||| || |||| || || ||| ||| Sbjct 14472 GGAACTCACCGCTCAGCACGCGACGAACATAGATGTTCGATGTGAATGGCTCGAAGCATT 14531 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | | ||||| ||||| || | || || || |||||||| || || |||| || |||| Sbjct 14532 CGTTATTGCCAAGAATCTGCGAGGTTGACGCGGTTGGCATTGGTGCTACCAGCAGAGAGT 14591 Query 65553 TTCGCAATCCGTTCATTTCAA 65573 | |||| ||| || |||||| Sbjct 14592 TCCGCATGCCGCTCGTTTCAA 14612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554088971440