Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq286 280 3e-73 seq312 266 6e-69 >seq286 Length=961496 Score = 280 bits (310), Expect = 3e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||| Sbjct 38319 AGTAGGGTAAAACCAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTCAGT 38260 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||| |||| || |||||| || || | |||||||||||||||||| Sbjct 38259 GGGTGAACAATCCAACCCTTAGCGTCTTCTGCGGCGCTAGGTTAGGAAGAGCCGACATCG 38200 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 38199 AAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 38140 Query 216 GTAACTTTTCTGGCACCTCT 235 |||| | ||||| ||||||| Sbjct 38139 GTAATTATTCTGACACCTCT 38120 Score = 280 bits (310), Expect = 3e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||| Sbjct 503286 AGTAGGGTAAAACCAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTCAGT 503345 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||| |||| || |||||| || || | |||||||||||||||||| Sbjct 503346 GGGTGAACAATCCAACCCTTAGCGTCTTCTGCGGCGCTAGGTTAGGAAGAGCCGACATCG 503405 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 503406 AAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 503465 Query 216 GTAACTTTTCTGGCACCTCT 235 |||| | ||||| ||||||| Sbjct 503466 GTAATTATTCTGACACCTCT 503485 Score = 190 bits (210), Expect = 3e-46 Identities = 128/143 (90%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||||||||||||| |||| || |||||| || || | ||||||||||||||| Sbjct 489393 AGTGGGTGAACAATCCAACCCTTAGCGTCTTCTGCGGCGCTAGGTTAGGAAGAGCCGACA 489452 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| Sbjct 489453 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCCTGGCCGCCACAAGCCAGTTATCCCT 489512 Query 213 GTGGTAACTTTTCTGGCACCTCT 235 ||||||| | ||||| ||||||| Sbjct 489513 GTGGTAATTATTCTGACACCTCT 489535 >seq312 Length=33689 Score = 266 bits (294), Expect = 6e-69 Identities = 179/200 (90%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||| Sbjct 26609 AGTAGGGTAAAACCAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTCAGT 26550 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||||| | || || |||| | || || | ||||| |||||||||||| Sbjct 26549 GGGTGAACAATCCAACCCCTAGCGTCTTCTTCGGCGCTAGGTTAGGAGGAGCCGACATCG 26490 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 26489 AAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTG 26430 Query 216 GTAACTTTTCTGGCACCTCT 235 |||| | ||||| ||||||| Sbjct 26429 GTAATTATTCTGACACCTCT 26410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854397274464