Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq244 233 2e-56 seq22 122 7e-23 >seq244 Length=386007 Score = 233 bits (258), Expect = 2e-56 Identities = 543/804 (68%), Gaps = 25/804 (3%) Strand=Plus/Plus Query 61121 TCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCG 61179 ||||||| ||||||||| | ||| || ||| || ||| ||||||||| | | | || Sbjct 100796 TCTGGACAGTGGAGGAGATTGATCTGGGCAATGATATGGTGGACTGGGAGAAGCTGAACG 100855 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | || |||| ||| ||||| || || || | |||||||| || || ||||| || Sbjct 100856 ATGGG-GAACGACACTTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATT 100914 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| || | || ||| | |||||||| ||| | || | ||| || Sbjct 100915 GTGCTGGAGAACTTGGCACAGCGCTTCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGC 100974 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 |||||||| |||||||| ||||| |||||||| ||||| |||| |||| || || | Sbjct 100975 TTCTACGGGTTCCAGATCGCCATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCTG 101034 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGT----TCAATGCCATCGAGAC 61415 ||||||||||||| || || || ||| ||| || | |||||||| || Sbjct 101035 GATACGTACATCACCGACTTGGTAGA----GAAGGATCGTCTTCTGCATGCCATCTCAAC 101090 Query 61416 GATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGC 61475 ||| || | || ||| ||||| ||||| || |||||| |||| | || | Sbjct 101091 GATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGC--CGAC 101148 Query 61476 TACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATC 61535 | | || | || || | | ||||| || | ||| |||||| |||| ||| ||| || Sbjct 101149 T-CGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTC 101207 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 || |||| | || ||| ||||||| ||||| || |||||||| ||||| |||||||| Sbjct 101208 ATTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAA 101267 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTTGCTATTCAA 61652 ||| | || || || || ||||| ||||| || ||||| || | ||| ||| | Sbjct 101268 CGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGCGTGCCTCTTG-TATGAGA 101326 Query 61653 ACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGT 61712 | ||| | || || | | | ||||||| | |||||| | | |||||||| Sbjct 101327 A--CTACATTGTCAACAAGCTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGCGGT 101384 Query 61713 AACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 ||||| | || || |||| || || | || || ||| ||||| ||||| Sbjct 101385 GGAGATCGAGCGCGAGTTCATCTG--CGATGCGCTTCCAGTGCGACTGATCGGGATGAAC 101442 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGG 61829 | | || ||| | || |||||||| || || ||||| ||| |||||| | |||| Sbjct 101443 TCGGATCTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGGC 101502 Query 61830 TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGA 61889 | ||| || || || | || || || ||||| || ||||| ||||||||| || | Sbjct 101503 AACGAA-CGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCA 101561 Query 61890 TGGCAAGACGAATTTTTTCGAGAA 61913 ||||||||||| || || ||||| Sbjct 101562 GGGCAAGACGAACTTCTTTGAGAA 101585 >seq22 Length=626277 Score = 122 bits (134), Expect = 7e-23 Identities = 208/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| ||||| ||| |||| |||||| ||||| ||||| || ||||| || ||||| || Sbjct 347562 TTCCACACGTTCCATGAATAAATCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACG 347621 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC-GAGGAACTCAAAGATGTCGGCATGCC 66446 ||| || || | || ||| || | ||| |||||| | ||| || || |||||| Sbjct 347622 TTGATCTTCTTTTCCAGTATTCTT-CTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCC 347680 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | ||||| || || | || |||| ||| | ||||| || |||||||| || || || | Sbjct 347681 AAGGTTCAAGATAAACAGCAAACGCACCCTTGCGTTTACCACCACCTTGATCTACATAAC 347740 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 |||| || || | ||||| | ||||||||| || || || ||| | ||||| || | Sbjct 347741 GAGCTGTGTTATTCCACACACGAAGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTC 347800 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCC 66625 | | || ||| | || |||| ||||||| | |||||||||||| ||| Sbjct 347801 CTGCAATATAACTTCCAGCAGAGCGAATATTATGAACATGAACACCAATACCACCAGCC 347859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566454330160