Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acidomyces_20richmondensis_20[genbank_20GCA_5F001572075.1_202016-02- 24] 1,683 sequences; 26,819,972 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1295 262 3e-65 seq959 226 2e-54 >seq1295 Length=44835 Score = 262 bits (290), Expect = 3e-65 Identities = 641/963 (67%), Gaps = 10/963 (1%) Strand=Plus/Plus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| | || || ||||| || ||||||||||| | ||| ||||| || || ||||| | Sbjct 17071 TGGGTAAAGCCAGGGATGCAAGATTGCAGACAGCGACCTCATCAGGGGCAGTGTACTCCA 17130 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 ||| || |||||||| || |||| ||||| || | || | || || || | Sbjct 17131 TAATCTCAGTGCACAGGTTGGAAGAGCGAATGGTACCAAGGTTTTTCTGGTTGGATTTTC 17190 Query 66120 -GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178 | ||||| |||||||| || |||| | ||||| || ||||| ||| | ||| | | Sbjct 17191 TGTTTGCA-GCATCCTTATAGCACATGAAGGGAGTACCTGTCTCCGTTTGAGCCTCGAGG 17249 Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA-CGTACCGCCCTACCTTTGCGTTCGTA 66237 || |||| ||| || | || ||| || || | | | ||| | ||||||||| Sbjct 17250 ATTGCGTACCATAGTTTCTGCGCACGCACAGTCTCGCGAC-CACGACCCTCGCGTTCGTA 17308 Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297 ||||||||||| ||||| ||| || | || || | || | || || | ||| Sbjct 17309 TTGTTCGTAGAGAGCCTCGAACTTTTCCCCATACACATCAGCAAGGCCAGGGCATTCGTG 17368 Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 |||||||||| | ||| | | ||| || || || ||| || | || || || Sbjct 17369 CGGACACATCAAAGTCCATGTGCTGTTCTGCTCCACCCGTTTCATGAACAAGTCTGGGAT 17428 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 ||| || |||||||| || ||||| || || || || |||| || || ||||||| Sbjct 17429 CCAAAGCGCGTAGAAAAGGTCGCGAGCACGGACTTCTTCTTTGCCATGGTTCTTGCGCAG 17488 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 ||||||||| || ||||| |||||||| || || || |||||||| || | || Sbjct 17489 GTCGAGGAAGGAGAATATGTCCGCATGCCACGGCTCAAGATAGATGGCAAAGGCACCGGG 17548 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 ||| ||| ||||||||| ||||| || || || |||||| | ||||| | ||| || Sbjct 17549 ACGCTTGTTGCCACCTTGATCGACATACCGCGCAGTGTTGTTGTATACACGAAGCATAGG 17608 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 ||| | ||||| || | ||||| ||||| | || || ||| ||| || || Sbjct 17609 TACCAATCCGTTTGAAGTTCCATTTGTGCCACCAATATACGACCCTGTTGCGCGAATGCG 17668 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAG---ATGGCAGCACAATCGGCCAC 66654 ||| ||||| ||||| |||||||| || |||| ||| ||||| ||| | | Sbjct 17669 GTGTACATTGAGACCTATACCACCAGCATTCTTTGAGATCATGGC-GCATGTTTTCAGAG 17727 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 |||| | ||||| || || ||| |||| ||| | | | | |||||| | Sbjct 17728 TGTC--ATAAATGCCCTCGATACTGTCCTCCTTCATGTCAATCAAGAAACATGAAGCCAA 17785 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 ||||| |||||| ||||| ||| ||||| |||| ||| || || ||||| | | Sbjct 17786 TTGGGCGGATGGTGTGCCGGCCATGAACAGGGTTGGTGAAGCATGAGTGAAGTACTTGTT 17845 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 |||||| ||||| |||||||| |||| || |||| |||||| || || || | || Sbjct 17846 CGACATGAGGTTGTAGGTCTCGATTGCAGCCTCGATGTCTTCGCCGTGTATACCCACCGC 17905 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTA 66894 | ||||| | | || ||| || | || | | | | || || | || Sbjct 17906 AACACGCATGATCATGTGTTGCGGTCTCTCTGCAATTTTCCCGTCAATTCTCAGGAGATA 17965 Query 66895 GGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGAT 66954 |||||||| || ||||||| ||||| || |||||||| || | ||| |||||| Sbjct 17966 TGAGCGTTCAAGAGTCTTGAAGCCAAAATATTGATAATTGAAGTCCCGATCATACACGAT 18025 Query 66955 GGC 66957 ||| Sbjct 18026 GGC 18028 Score = 114 bits (126), Expect = 1e-20 Identities = 330/503 (66%), Gaps = 6/503 (1%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| ||||||| | |||||| | || | || ||||||||||| || Sbjct 16167 TCAACAGTGAATTGGATCGGTGCCGAGGCCGCCATTGTACGGAGGTAGTACATGCCAGTT 16226 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTC 65196 |||||||| |||| | ||||||||| | || | || || | | | || || Sbjct 16227 TTGAGGCCCAATTTCCAACCGGTGAAATGCAT-GCTGGTGATCTTACCCATGGTGGGTTC 16285 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || ||||| | ||| ||| || |||||| | || || || |||||||| Sbjct 16286 TTTCATGTGAATATTTAGCGAATGAGATTGGTCGATGAATGCGCCGCGGTCAGCAGCCAT 16345 Query 65257 GTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 | | ||| |||| | || || ||||| || |||||||| ||| | ||| Sbjct 16346 CTGCACAATATGACG--CTGACTGATTTCCCATACAGTCTTGTAAAGGGCTTTGAGGTCA 16403 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 |||||| | | ||| ||| || || || | | |||||| ||||| || ||| Sbjct 16404 TCTGGAATGTTCGGGATGCGCTGAACAGACCCGCCATCTGCAATGATGCGGTTCTTCATG 16463 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 |||||||| | ||| ||||| ||| | | | ||| | |||| || ||| Sbjct 16464 TTGTCTGACCAGAGACCGCGATCGACAAGGTCCTTTAGCAACCATGGGTTGACCACCTGG 16523 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||| | || |||||||| || ||||| || ||| || || || ||||| Sbjct 16524 AACTCGCCAGCTAGAACACGACGACTGTAAATGTTCGAAGTGTACGGCTCGAAACATTCA 16583 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 || ||| | || || | ||| || || ||||||||||| || |||| ||||||||| Sbjct 16584 TTGAAGCCCATGATCTGCGAAGTCGACGCTGTTGGCATGGGCGCCACCAGCAATGAGTTG 16643 Query 65555 CGCAATCCGTTCATTTCAATGTT 65577 || | ||||| | | |||| || Sbjct 16644 CGGACTCCGTGCTGTGCAATCTT 16666 >seq959 Length=28360 Score = 226 bits (250), Expect = 2e-54 Identities = 575/860 (67%), Gaps = 30/860 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||||||||| ||||||||||||| |||||| ||||| | Sbjct 15621 ATATGGCAAATGTACAAGAAGGCGGAAGCCTCCTTCTGGACGGCCGAGGAGATCGATCTT 15680 Query 61147 TCCAAAGACATGAATGACTGGGA---GCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || ||||| || |||||||| | ||| | || | ||| | | |||| | | Sbjct 15681 TCAAAAGATTTGCATGACTGGAACAAGCGCCT---GAATGATGACGAGCGTTTCTTCATC 15737 Query 61204 ---CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 ||||| | || || ||||| || || ||||| || ||||| ||||| | | || Sbjct 15738 TCTCATGTCCTCGCCTTTTTTGCGGCATCAGACGGGATTGTCAACGAGAACCTCGTCGAG 15797 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 || ||| | ||||||||| | | || || || || ||||||||||||||||| Sbjct 15798 CGATTCTCAGCCGAGGTGCAAATACCCGAAGCACGCTGCTTCTACGGCTTCCAGATCATG 15857 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||||||| ||||||| |||| ||| | | |||||||| || |||||||| || | | Sbjct 15858 ATGGAGAATATCCACTCTGAGACTTACTCTCTGCTCATCGACACCTACATCAGCGAACCG 15917 Query 61381 GCGGAACGTGAACG-AT-TGTTCAATGCCATCGAGACGATAC----CGGCGGTGAAGCGG 61434 ||| | ||| || | ||||| |||||||| | || | | |||| | | Sbjct 15918 AAACAAC--GCACGTATCTATTCAACGCCATCGACAACATCCCATGCATCGGTAA----G 15971 Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 || ||||||||||| || | | ||||| | | || | | || || || || | Sbjct 15972 AAGGCGGATTGGGCGCTGCGA-TGGATTAGCGATAAGAATTCGACGTTCGGCTGTCGTCT 16030 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || || || | || ||||| | || ||| | | || || || | || || || Sbjct 16031 CGTTGCTTTCGCCGCTGTAGAGGGCATTTTCTTCTCTAGCTCCTTCGCATCCATTTTCTG 16090 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | || || ||||| || ||||||||||||||||| ||| ||| | || || || || Sbjct 16091 GCTCAAAAAGCGTGGTCTCATGCCCGGTCTGACCTTTTCCAACGAGCTTATTTCCCGTGA 16150 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC 61673 ||||||||||| || || || | |||| || | | || | | | || Sbjct 16151 TGAGGGCATGCACACAGACTTCGCCTGTCTGCTCTTTTCCCACCTTC--GCAACAAGCCC 16208 Query 61674 G-TCGGAGGAGCGTGTGGGTGAG-ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTT 61731 | ||| ||||| ||| | ||| || | ||| || || || || ||| |||| || Sbjct 16209 GATCG--GGAGCTGGTGAG-GAGCATCATCACTGAAGCCGTCACCATTGAAAAGGAGTTC 16265 Query 61732 CTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTAT 61791 |||| ||| | ||||| ||| |||| | |||||||| | || |||| || || Sbjct 16266 GTGACAGACTCATTGCCTGTCGCACTACTAGGCATGAACTCCAACCTCATGTGCCAATAC 16325 Query 61792 ATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACG 61851 || || ||||| ||||| || || || ||| | || | | || || || | Sbjct 16326 ATCGAGTTTGTGGCCGATCGCCTACTGCTCGCGCTCGGCAACAGCAGGTATTACAACGCC 16385 Query 61852 AAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 | ||||||||||| |||||||| | || ||| ||| |||||||| ||||| || ||| Sbjct 16386 ACCAACCCATTTGACTTCATGGAGAACATCTCGTTGGCGGGCAAGACCAATTTCTTTGAG 16445 Query 61912 AAACGTGTAGGCGACTATCA 61931 || | || || || ||||| Sbjct 16446 AAGAGAGTCGGTGATTATCA 16465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559845259120