Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq153 387 2e-105 seq83 235 8e-60 seq80 235 8e-60 seq10 132 7e-29 >seq153 Length=1098 Score = 387 bits (428), Expect = 2e-105 Identities = 243/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 14 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 71 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 72 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 131 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 132 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 191 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 251 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 252 GGCCATAGTCCCTCTAA 268 >seq83 Length=7934 Score = 235 bits (260), Expect = 8e-60 Identities = 192/229 (84%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| | Sbjct 2642 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 2585 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | |||||| Sbjct 2584 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 2525 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || ||| ||||| | |||||||| | ||||||||||||||||||| Sbjct 2524 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 2465 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2464 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 2416 Score = 235 bits (260), Expect = 8e-60 Identities = 192/229 (84%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| | Sbjct 5515 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 5572 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | |||||| Sbjct 5573 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 5632 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || ||| ||||| | |||||||| | ||||||||||||||||||| Sbjct 5633 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 5692 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5693 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5741 >seq80 Length=8840 Score = 235 bits (260), Expect = 8e-60 Identities = 192/229 (84%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| | Sbjct 4502 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 4445 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | |||||| Sbjct 4444 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 4385 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || ||| ||||| | |||||||| | ||||||||||||||||||| Sbjct 4384 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 4325 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4324 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4276 >seq10 Length=1128165 Score = 132 bits (146), Expect = 7e-29 Identities = 114/140 (81%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 89 CTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147 || |||||| ||||| | ||| | |||||||||| || ||| ||||| | | Sbjct 840713 CTCTCCCCAGCACGACAGAGTTTAACAAGATTACCCAATTCTTTCGAACAAGGAAAAGAA 840654 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 840653 CTCGTTGGCTCTGTCACTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 840594 Query 208 CTGTTATTGCCTCAAACTTC 227 |||||||||||||||||||| Sbjct 840593 CTGTTATTGCCTCAAACTTC 840574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998863540