Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq153 387 2e-105
seq83 235 8e-60
seq80 235 8e-60
seq10 132 7e-29
>seq153
Length=1098
Score = 387 bits (428), Expect = 2e-105
Identities = 243/257 (95%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 14 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 71
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 72 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 131
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 132 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 191
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 251
Query 240 GGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 252 GGCCATAGTCCCTCTAA 268
>seq83
Length=7934
Score = 235 bits (260), Expect = 8e-60
Identities = 192/229 (84%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| |
Sbjct 2642 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 2585
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | ||||||
Sbjct 2584 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 2525
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| || ||| ||||| | |||||||| | |||||||||||||||||||
Sbjct 2524 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 2465
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 2416
Score = 235 bits (260), Expect = 8e-60
Identities = 192/229 (84%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| |
Sbjct 5515 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 5572
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | ||||||
Sbjct 5573 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 5632
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| || ||| ||||| | |||||||| | |||||||||||||||||||
Sbjct 5633 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 5692
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5693 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 5741
>seq80
Length=8840
Score = 235 bits (260), Expect = 8e-60
Identities = 192/229 (84%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| ||| |
Sbjct 4502 GTACAAAGGTCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 4445
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||| | ||| |||||||||| | |||||||| ||||| | ||| | ||||||
Sbjct 4444 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCAGCACGACAGAGTTTAACAAGATT 4385
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| || ||| ||||| | |||||||| | |||||||||||||||||||
Sbjct 4384 ACCCAATTCTTTCGAACAAGGAAAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 4325
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4324 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4276
>seq10
Length=1128165
Score = 132 bits (146), Expect = 7e-29
Identities = 114/140 (81%), Gaps = 1/140 (1%)
Strand=Plus/Minus
Query 89 CTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147
|| |||||| ||||| | ||| | |||||||||| || ||| ||||| | |
Sbjct 840713 CTCTCCCCAGCACGACAGAGTTTAACAAGATTACCCAATTCTTTCGAACAAGGAAAAGAA 840654
Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207
||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840653 CTCGTTGGCTCTGTCACTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 840594
Query 208 CTGTTATTGCCTCAAACTTC 227
||||||||||||||||||||
Sbjct 840593 CTGTTATTGCCTCAAACTTC 840574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751998863540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |