Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq80 917 0.0 seq83 713 0.0 seq10 360 8e-97 seq46 127 9e-27 >seq80 Length=8840 Score = 917 bits (1016), Expect = 0.0 Identities = 618/686 (90%), Gaps = 5/686 (1%) Strand=Plus/Plus Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 |||||| || |||| | ||||||| |||| |||||||||||||||||||||||||||| Sbjct 5377 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 5436 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5437 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 5496 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 5497 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 5556 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239 |||||||||||||||||||||||||| |||||||||| |||||||||| |||| Sbjct 5557 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 5616 Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299 |||||||||||||||| | |||||||||||||| | ||||||| ||||||||| | Sbjct 5617 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 5676 Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357 | | | || | || ||||||| || |||||| || | || || | || ||||| Sbjct 5677 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAGG--GGAGACGACATACTACCAGCCTG 5734 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 5735 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 5794 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 5795 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 5854 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5855 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 5914 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 5915 CGGAAGGATTTGAGTAAGAGCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGA 5974 Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5975 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 6034 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||| |||||||||| Sbjct 6035 ATCGTCAAATTTGGGCATAGGGGCGA 6060 >seq83 Length=7934 Score = 713 bits (790), Expect = 0.0 Identities = 499/563 (89%), Gaps = 5/563 (1%) Strand=Plus/Plus Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 |||||| || |||| | ||||||| |||| |||||||||||||||||||||||||||| Sbjct 3517 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 3576 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3577 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 3636 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 3637 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 3696 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239 |||||||||||||||||||||||||| |||||||||| |||||||||| |||| Sbjct 3697 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 3756 Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299 |||||||||||||||| | |||||||||||||| | ||||||| ||||||||| | Sbjct 3757 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 3816 Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357 | | | || | || ||||||| || |||||| || | || || | || ||||| Sbjct 3817 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAG--GGGAGACGACATACTACCAGCCTG 3874 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 3875 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 3934 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 3935 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 3994 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3995 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 4054 Query 538 CGGATGGATTTGAGTAAGAGCAT 560 |||| |||||||||||||||||| Sbjct 4055 CGGAAGGATTTGAGTAAGAGCAT 4077 Score = 713 bits (790), Expect = 0.0 Identities = 499/563 (89%), Gaps = 5/563 (1%) Strand=Plus/Minus Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 |||||| || |||| | ||||||| |||| |||||||||||||||||||||||||||| Sbjct 4640 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 4581 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4580 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 4521 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 4520 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 4461 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239 |||||||||||||||||||||||||| |||||||||| |||||||||| |||| Sbjct 4460 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 4401 Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299 |||||||||||||||| | |||||||||||||| | ||||||| ||||||||| | Sbjct 4400 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 4341 Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357 | | | || | || ||||||| || |||||| || | || || | || ||||| Sbjct 4340 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAG--GGGAGACGACATACTACCAGCCTG 4283 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 4282 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 4223 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 4222 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 4163 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4162 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 4103 Query 538 CGGATGGATTTGAGTAAGAGCAT 560 |||| |||||||||||||||||| Sbjct 4102 CGGAAGGATTTGAGTAAGAGCAT 4080 >seq10 Length=1128165 Score = 360 bits (398), Expect = 8e-97 Identities = 231/252 (92%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 377 GCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436 |||||||||||| |||||||| |||||||||||||||||| |||||||| ||| |||||| Sbjct 839940 GCTAGGATGCTGTCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGAGCAAAGAGTCT 839999 Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496 |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||| Sbjct 840000 GGCATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATAAAAGTGAAGGGAGGTG 840059 Query 497 GGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGA 556 |||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| Sbjct 840060 GGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTTCTGAAGGATTTTAGTAAGA 840119 Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616 |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 840120 GCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGAATAGGGTGAGGCCAGAGGA 840179 Query 617 AACTCTGGTGGA 628 |||||| || || Sbjct 840180 AACTCTCGTCGA 840191 >seq46 Length=127010 Score = 127 bits (140), Expect = 9e-27 Identities = 87/98 (89%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 413 CTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGC 472 |||| ||| |||| ||||||||||||| ||||||||||||||||||||||| |||| || Sbjct 41330 CTTGAAACTTGGACTAAGGAGTCTAACACCTATGCGAGTGTTTGGGTGTCAAGCCCGAGC 41271 Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG 510 ||||| |||||||||||| ||||||||||||| |||| Sbjct 41270 GCGTAGTGAAAGTGAACGAAGGTGGGAACCCGCAAGGG 41233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996653800