Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq80 917 0.0
seq83 713 0.0
seq10 360 8e-97
seq46 127 9e-27
>seq80
Length=8840
Score = 917 bits (1016), Expect = 0.0
Identities = 618/686 (90%), Gaps = 5/686 (1%)
Strand=Plus/Plus
Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59
|||||| || |||| | ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 5377 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 5436
Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 5437 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 5496
Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 5497 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 5556
Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 5557 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 5616
Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299
|||||||||||||||| | |||||||||||||| | ||||||| ||||||||| |
Sbjct 5617 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 5676
Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357
| | | || | || ||||||| || |||||| || | || || | || |||||
Sbjct 5677 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAGG--GGAGACGACATACTACCAGCCTG 5734
Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 5735 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 5794
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 5795 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 5854
Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 5855 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 5914
Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 5915 CGGAAGGATTTGAGTAAGAGCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGA 5974
Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5975 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 6034
Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||||||| ||||||||||
Sbjct 6035 ATCGTCAAATTTGGGCATAGGGGCGA 6060
>seq83
Length=7934
Score = 713 bits (790), Expect = 0.0
Identities = 499/563 (89%), Gaps = 5/563 (1%)
Strand=Plus/Plus
Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59
|||||| || |||| | ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 3517 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 3576
Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3577 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 3636
Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 3637 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 3696
Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 3697 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 3756
Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299
|||||||||||||||| | |||||||||||||| | ||||||| ||||||||| |
Sbjct 3757 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 3816
Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357
| | | || | || ||||||| || |||||| || | || || | || |||||
Sbjct 3817 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAG--GGGAGACGACATACTACCAGCCTG 3874
Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 3875 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 3934
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 3935 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 3994
Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3995 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 4054
Query 538 CGGATGGATTTGAGTAAGAGCAT 560
|||| ||||||||||||||||||
Sbjct 4055 CGGAAGGATTTGAGTAAGAGCAT 4077
Score = 713 bits (790), Expect = 0.0
Identities = 499/563 (89%), Gaps = 5/563 (1%)
Strand=Plus/Minus
Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59
|||||| || |||| | ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 4640 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 4581
Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4580 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 4521
Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 4520 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 4461
Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 4460 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 4401
Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299
|||||||||||||||| | |||||||||||||| | ||||||| ||||||||| |
Sbjct 4400 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 4341
Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357
| | | || | || ||||||| || |||||| || | || || | || |||||
Sbjct 4340 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAG--GGGAGACGACATACTACCAGCCTG 4283
Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 4282 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 4223
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 4222 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 4163
Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4162 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 4103
Query 538 CGGATGGATTTGAGTAAGAGCAT 560
|||| ||||||||||||||||||
Sbjct 4102 CGGAAGGATTTGAGTAAGAGCAT 4080
>seq10
Length=1128165
Score = 360 bits (398), Expect = 8e-97
Identities = 231/252 (92%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 377 GCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436
|||||||||||| |||||||| |||||||||||||||||| |||||||| ||| ||||||
Sbjct 839940 GCTAGGATGCTGTCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGAGCAAAGAGTCT 839999
Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496
|||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||
Sbjct 840000 GGCATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATAAAAGTGAAGGGAGGTG 840059
Query 497 GGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGA 556
|||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 840060 GGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTTCTGAAGGATTTTAGTAAGA 840119
Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616
|||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 840120 GCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGAATAGGGTGAGGCCAGAGGA 840179
Query 617 AACTCTGGTGGA 628
|||||| || ||
Sbjct 840180 AACTCTCGTCGA 840191
>seq46
Length=127010
Score = 127 bits (140), Expect = 9e-27
Identities = 87/98 (89%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 413 CTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGC 472
|||| ||| |||| ||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 41330 CTTGAAACTTGGACTAAGGAGTCTAACACCTATGCGAGTGTTTGGGTGTCAAGCCCGAGC 41271
Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG 510
||||| |||||||||||| ||||||||||||| ||||
Sbjct 41270 GCGTAGTGAAAGTGAACGAAGGTGGGAACCCGCAAGGG 41233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079996653800
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