Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq83 311 1e-82 seq80 311 1e-82 seq153 304 2e-80 seq10 248 1e-63 >seq83 Length=7934 Score = 311 bits (344), Expect = 1e-82 Identities = 224/257 (87%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2497 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2438 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || || | |||||| |||||||||||| || Sbjct 2437 CCTGTTATTGCCTCAAACTTCCATCAACTTGA-GTTGATAGTCTCTCTAAGAAGCCGGCG 2379 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||| Sbjct 2378 ACCAACCAAAGTTAGCCTGGCTATTTAGCAGAGTAAGGTCTCGCTCGTTATCGCAATTAA 2319 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||| |||| |||| ||||||||||||||||||||||||||| | ||||||||| Sbjct 2318 GCAGACAAGTCACCCCACGAACTAAGAACGGCCATGCACCACCACCTGAAAAATCAAGAA 2259 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 2258 AGAGCTCTCAATCTGTC 2242 Score = 311 bits (344), Expect = 1e-82 Identities = 224/257 (87%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5660 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 5719 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || || | |||||| |||||||||||| || Sbjct 5720 CCTGTTATTGCCTCAAACTTCCATCAACTTGA-GTTGATAGTCTCTCTAAGAAGCCGGCG 5778 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||| Sbjct 5779 ACCAACCAAAGTTAGCCTGGCTATTTAGCAGAGTAAGGTCTCGCTCGTTATCGCAATTAA 5838 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||| |||| |||| ||||||||||||||||||||||||||| | ||||||||| Sbjct 5839 GCAGACAAGTCACCCCACGAACTAAGAACGGCCATGCACCACCACCTGAAAAATCAAGAA 5898 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 5899 AGAGCTCTCAATCTGTC 5915 >seq80 Length=8840 Score = 311 bits (344), Expect = 1e-82 Identities = 224/257 (87%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4357 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4298 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || || | |||||| |||||||||||| || Sbjct 4297 CCTGTTATTGCCTCAAACTTCCATCAACTTGA-GTTGATAGTCTCTCTAAGAAGCCGGCG 4239 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||| Sbjct 4238 ACCAACCAAAGTTAGCCTGGCTATTTAGCAGAGTAAGGTCTCGCTCGTTATCGCAATTAA 4179 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||| |||| |||| ||||||||||||||||||||||||||| | ||||||||| Sbjct 4178 GCAGACAAGTCACCCCACGAACTAAGAACGGCCATGCACCACCACCTGAAAAATCAAGAA 4119 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 4118 AGAGCTCTCAATCTGTC 4102 >seq153 Length=1098 Score = 304 bits (336), Expect = 2e-80 Identities = 225/260 (87%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 TACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 217 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 218 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 277 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 278 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 337 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 397 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 398 GAAAGAGCTCTCAGTCTGTC 417 >seq10 Length=1128165 Score = 248 bits (274), Expect = 1e-63 Identities = 192/226 (85%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 840654 ACTCGTTGGCTCTGTCACTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 840595 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||| || || | || |||||| |||||||||||| | Sbjct 840594 CCTGTTATTGCCTCAAACTTCTATCAACTTG-AGTTGATAGTCTCTCTAAGAAGCCGGGG 840536 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | |||||| ||| ||||||||||||| |||||||||| ||||||||| |||||| Sbjct 840535 ATCAACCAAAGTTAGCCTGGCTATTTAGCAGAGTAAGGTCTCGCTCGTTATCGCAATTAA 840476 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||| |||| |||| ||||||||||||||| |||||||||| Sbjct 840475 GCAGACAAGTCACCCCACGAACTAAGAACGGCCA-CCACCACCACC 840431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798795836