Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq80 493 2e-137 seq10 118 2e-24 seq5 109 9e-22 >seq80 Length=8840 Score = 493 bits (546), Expect = 2e-137 Identities = 289/297 (97%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 8146 TACTAAGCGGTATTACCATTGGGGCAA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 8088 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8087 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 8028 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8027 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 7968 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7967 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 7908 Query 241 CAAATTTCGAGGGA--CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 || ||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 7907 CACATTTCGAGGAACTCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 7851 >seq10 Length=1128165 Score = 118 bits (130), Expect = 2e-24 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA--CTAAAGGATCGA 266 ||||||||||||||||| || ||||||||||||| ||||||||| | |||||||||||| Sbjct 839603 CCCTGTGGTAACTTTTCCGGTACCTCTAGCCTCACATTTCGAGGAACTCTAAAGGATCGA 839544 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 |||| |||| ||| ||||||||||||||| Sbjct 839543 TAGGTCACATTTTTATGGTTTGTATTCAC 839515 >seq5 Length=1748254 Score = 109 bits (120), Expect = 9e-22 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||||||||||| | ||||||||||||||| | || | | |||||||||||||| || Sbjct 1350880 CGACATCGAAGGGTTGAAAAGCAACGTCGCTGTTAATACCTCGCTGCCACAAGCCAATTT 1350821 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||| ||||||||||||||| |||||| | |||| ||| ||| Sbjct 1350820 TCCCTATGGTAACTTTTCTGGTACCTCTGGTCTCACATTCCGA 1350778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398667136