Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq80 493 2e-137
seq10 118 2e-24
seq5 109 9e-22
>seq80
Length=8840
Score = 493 bits (546), Expect = 2e-137
Identities = 289/297 (97%), Gaps = 3/297 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 8146 TACTAAGCGGTATTACCATTGGGGCAA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 8088
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8087 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 8028
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8027 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 7968
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7967 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 7908
Query 241 CAAATTTCGAGGGA--CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 7907 CACATTTCGAGGAACTCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 7851
>seq10
Length=1128165
Score = 118 bits (130), Expect = 2e-24
Identities = 80/89 (90%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA--CTAAAGGATCGA 266
||||||||||||||||| || ||||||||||||| ||||||||| | ||||||||||||
Sbjct 839603 CCCTGTGGTAACTTTTCCGGTACCTCTAGCCTCACATTTCGAGGAACTCTAAAGGATCGA 839544
Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295
|||| |||| ||| |||||||||||||||
Sbjct 839543 TAGGTCACATTTTTATGGTTTGTATTCAC 839515
>seq5
Length=1748254
Score = 109 bits (120), Expect = 9e-22
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207
|||||||||||| | ||||||||||||||| | || | | |||||||||||||| ||
Sbjct 1350880 CGACATCGAAGGGTTGAAAAGCAACGTCGCTGTTAATACCTCGCTGCCACAAGCCAATTT 1350821
Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
||||| ||||||||||||||| |||||| | |||| ||| |||
Sbjct 1350820 TCCCTATGGTAACTTTTCTGGTACCTCTGGTCTCACATTCCGA 1350778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854398667136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |