Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq83 170 2e-40
seq80 170 2e-40
>seq83
Length=7934
Score = 170 bits (188), Expect = 2e-40
Identities = 173/219 (79%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60
|||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||
Sbjct 1858 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 1799
Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
||||| || | |||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1798 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 1739
Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178
| |||| ||| |||| ||||| || || || ||| ||| | || ||| |
Sbjct 1738 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 1680
Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216
||| |||||||||||| || ||| |||| ||||||
Sbjct 1679 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 1642
Score = 170 bits (188), Expect = 2e-40
Identities = 173/219 (79%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60
|||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||
Sbjct 6299 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 6358
Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
||||| || | |||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 6359 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 6418
Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178
| |||| ||| |||| ||||| || || || ||| ||| | || ||| |
Sbjct 6419 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 6477
Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216
||| |||||||||||| || ||| |||| ||||||
Sbjct 6478 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 6515
>seq80
Length=8840
Score = 170 bits (188), Expect = 2e-40
Identities = 173/219 (79%), Gaps = 5/219 (2%)
Strand=Plus/Minus
Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60
|||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||
Sbjct 3718 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 3659
Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120
||||| || | |||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 3658 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 3599
Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178
| |||| ||| |||| ||||| || || || ||| ||| | || ||| |
Sbjct 3598 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 3540
Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216
||| |||||||||||| || ||| |||| ||||||
Sbjct 3539 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 3502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595199100504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |