Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq83 170 2e-40 seq80 170 2e-40 >seq83 Length=7934 Score = 170 bits (188), Expect = 2e-40 Identities = 173/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 1858 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 1799 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 ||||| || | |||||||||||||||||||||||| |||| |||||||||||| |||| Sbjct 1798 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 1739 Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178 | |||| ||| |||| ||||| || || || ||| ||| | || ||| | Sbjct 1738 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 1680 Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 ||| |||||||||||| || ||| |||| |||||| Sbjct 1679 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 1642 Score = 170 bits (188), Expect = 2e-40 Identities = 173/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 6299 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 6358 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 ||||| || | |||||||||||||||||||||||| |||| |||||||||||| |||| Sbjct 6359 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 6418 Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178 | |||| ||| |||| ||||| || || || ||| ||| | || ||| | Sbjct 6419 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 6477 Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 ||| |||||||||||| || ||| |||| |||||| Sbjct 6478 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 6515 >seq80 Length=8840 Score = 170 bits (188), Expect = 2e-40 Identities = 173/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 3718 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 3659 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 ||||| || | |||||||||||||||||||||||| |||| |||||||||||| |||| Sbjct 3658 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 3599 Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178 | |||| ||| |||| ||||| || || || ||| ||| | || ||| | Sbjct 3598 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 3540 Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 ||| |||||||||||| || ||| |||| |||||| Sbjct 3539 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595199100504