Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq83 444 1e-122 seq80 444 1e-122 seq153 315 1e-83 seq10 288 2e-75 >seq83 Length=7934 Score = 444 bits (492), Expect = 1e-122 Identities = 284/309 (92%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct 2333 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 2392 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2393 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 2452 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2453 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 2512 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2513 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 2572 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2573 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 2632 Query 320 CCCTTTGTA 328 |||||||| Sbjct 2633 ACCTTTGTA 2641 Score = 444 bits (492), Expect = 1e-122 Identities = 284/309 (92%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct 5824 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 5765 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5764 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 5705 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 5704 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 5645 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5644 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 5585 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 5584 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 5525 Query 320 CCCTTTGTA 328 |||||||| Sbjct 5524 ACCTTTGTA 5516 >seq80 Length=8840 Score = 444 bits (492), Expect = 1e-122 Identities = 284/309 (92%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct 4193 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 4252 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4253 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 4312 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 4313 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 4372 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4373 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 4432 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 4433 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 4492 Query 320 CCCTTTGTA 328 |||||||| Sbjct 4493 ACCTTTGTA 4501 >seq153 Length=1098 Score = 315 bits (348), Expect = 1e-83 Identities = 226/259 (87%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 273 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 214 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 213 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGTATATA 154 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 153 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 94 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 93 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 34 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 33 TACGTCCCTGCCCTTTGTA 15 >seq10 Length=1128165 Score = 288 bits (318), Expect = 2e-75 Identities = 198/224 (88%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 ||||||||||||| ||||||||||||||||| |||||| | || |||||||||||| Sbjct 840490 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGATCCCCGGCTTCTTAG 840549 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 || ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 840550 AGAGACTATCAACTCAAGTTGATAGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 840609 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| || Sbjct 840610 GATGTTCTGGGCCGCACGCGCGCTACAGTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 840669 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 ||| |||||||||||||||||||||||||||||||||| || Sbjct 840670 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAGAG 840713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198522368