Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq83 444 1e-122
seq80 444 1e-122
seq153 315 1e-83
seq10 288 2e-75
>seq83
Length=7934
Score = 444 bits (492), Expect = 1e-122
Identities = 284/309 (92%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2333 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 2392
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
|| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 2452
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 2453 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 2512
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2513 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 2572
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2573 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 2632
Query 320 CCCTTTGTA 328
||||||||
Sbjct 2633 ACCTTTGTA 2641
Score = 444 bits (492), Expect = 1e-122
Identities = 284/309 (92%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 5824 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 5765
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
|| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5764 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 5705
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 5704 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 5645
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 5644 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 5585
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 5584 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 5525
Query 320 CCCTTTGTA 328
||||||||
Sbjct 5524 ACCTTTGTA 5516
>seq80
Length=8840
Score = 444 bits (492), Expect = 1e-122
Identities = 284/309 (92%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 4193 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGGTCGCCGGCTTCTTAG 4252
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
|| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4253 AGAGACTATCAACTCAAGTTGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 4312
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 4313 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 4372
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4373 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAAAGCATTGCAATTATTG 4432
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4433 CTTTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCATGCGTTGATTACGTCCCTG 4492
Query 320 CCCTTTGTA 328
||||||||
Sbjct 4493 ACCTTTGTA 4501
>seq153
Length=1098
Score = 315 bits (348), Expect = 1e-83
Identities = 226/259 (87%), Gaps = 1/259 (0%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 273 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 214
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 213 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGTATATA 154
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 153 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 94
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 93 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 34
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 33 TACGTCCCTGCCCTTTGTA 15
>seq10
Length=1128165
Score = 288 bits (318), Expect = 2e-75
Identities = 198/224 (88%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
||||||||||||| ||||||||||||||||| |||||| | || ||||||||||||
Sbjct 840490 GAGCGAGACCTTACTCTGCTAAATAGCCAGGCTAACTTTGGTTGATCCCCGGCTTCTTAG 840549
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
|| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 840550 AGAGACTATCAACTCAAGTTGATAGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 840609
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 840610 GATGTTCTGGGCCGCACGCGCGCTACAGTGACAGAGCCAACGAGTTCTTTTCCTTGTTCG 840669
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243
||| |||||||||||||||||||||||||||||||||| ||
Sbjct 840670 AAAGAATTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAGAG 840713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947198522368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |