Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq80 787 0.0 seq11 91.5 5e-16 seq10 86.0 2e-14 >seq80 Length=8840 Score = 787 bits (872), Expect = 0.0 Identities = 497/537 (93%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7819 CTTTTGCTCTACTGAAGATTTCTGTTCTTCATGAGTCCCCCTTAGGACACCTGCGTTATG 7760 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 7759 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 7700 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| ||||||||||| | | |||| ||| |||| || |||| |||||||||| || Sbjct 7699 GGCCCACGAAGGACCTTGATACTAGAAGTTGGGCGGTAAAACCCAGCTCCGCTTCATCGA 7640 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| |||||||||||||||||||||| |||||||| |||||||| || Sbjct 7639 ATAAGTAAAAAAACAATAAGGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACCTA 7583 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | ||||||| | | ||| |||||||| ||| | ||||||||||||||||||||||||| Sbjct 7582 TCCTACACCCCCTATGTCTTTTCACAATGTCAAATTAGAGTCAAGCTCAACAGGGTCTTC 7523 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 7522 TTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 7463 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7462 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 7403 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 7402 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTCGAATCTCT 7343 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7342 TCGCTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 7286 Score = 100 bits (110), Expect = 9e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 538 |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 581 GAATCTCTTCGCTTTGACATTCAGAGCACTGCGCAGAAATCACATTGCGTCAACACCACT 522 Query 539 TTCTG 543 ||||| Sbjct 521 TTCTG 517 >seq11 Length=1087396 Score = 91.5 bits (100), Expect = 5e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 538 |||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 742098 GAATCTCTTCGCTTTAACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACT 742157 >seq10 Length=1128165 Score = 86.0 bits (94), Expect = 2e-14 Identities = 69/83 (83%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 ||||||||| || |||||||| ||| ||||||||||||||| ||| || |||||||| Sbjct 839431 CCGCTTCATCGAATAAGTAAAGGAACAATAAGGGTAGTGGTACTTCGCTGGCGCCGAA-- 839374 Query 235 GGCTCCCACTTATTCTACACCTC 257 |||||||| ||| ||||| ||| Sbjct 839373 -GCTCCCACCTATCCTACAACTC 839352 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACC 57 |||||||||||| | ||||||||||||| |||||||||||||||||||||| Sbjct 839483 CTTTTGCTCTACTGAAGATTTCTGTTCTTCATGAGTCCCCCTTAGGACACC 839433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635197449088