Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq80 787 0.0
seq11 91.5 5e-16
seq10 86.0 2e-14
>seq80
Length=8840
Score = 787 bits (872), Expect = 0.0
Identities = 497/537 (93%), Gaps = 3/537 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 7819 CTTTTGCTCTACTGAAGATTTCTGTTCTTCATGAGTCCCCCTTAGGACACCTGCGTTATG 7760
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 7759 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 7700
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||| ||||||||||| | | |||| ||| |||| || |||| |||||||||| ||
Sbjct 7699 GGCCCACGAAGGACCTTGATACTAGAAGTTGGGCGGTAAAACCCAGCTCCGCTTCATCGA 7640
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 7639 ATAAGTAAAAAAACAATAAGGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACCTA 7583
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
| ||||||| | | ||| |||||||| ||| | |||||||||||||||||||||||||
Sbjct 7582 TCCTACACCCCCTATGTCTTTTCACAATGTCAAATTAGAGTCAAGCTCAACAGGGTCTTC 7523
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7522 TTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 7463
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7462 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 7403
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 7402 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTCGAATCTCT 7343
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7342 TCGCTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 7286
Score = 100 bits (110), Expect = 9e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 538
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 581 GAATCTCTTCGCTTTGACATTCAGAGCACTGCGCAGAAATCACATTGCGTCAACACCACT 522
Query 539 TTCTG 543
|||||
Sbjct 521 TTCTG 517
>seq11
Length=1087396
Score = 91.5 bits (100), Expect = 5e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACT 538
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 742098 GAATCTCTTCGCTTTAACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACT 742157
>seq10
Length=1128165
Score = 86.0 bits (94), Expect = 2e-14
Identities = 69/83 (83%), Gaps = 3/83 (4%)
Strand=Plus/Minus
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234
||||||||| || |||||||| ||| ||||||||||||||| ||| || ||||||||
Sbjct 839431 CCGCTTCATCGAATAAGTAAAGGAACAATAAGGGTAGTGGTACTTCGCTGGCGCCGAA-- 839374
Query 235 GGCTCCCACTTATTCTACACCTC 257
|||||||| ||| ||||| |||
Sbjct 839373 -GCTCCCACCTATCCTACAACTC 839352
Score = 78.8 bits (86), Expect = 3e-12
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACC 57
|||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 839483 CTTTTGCTCTACTGAAGATTTCTGTTCTTCATGAGTCCCCCTTAGGACACC 839433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635197449088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |