Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq80 298 9e-79
>seq80
Length=8840
Score = 298 bits (330), Expect = 9e-79
Identities = 237/279 (85%), Gaps = 8/279 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 8144 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 8201
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8202 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 8261
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| |||
Sbjct 8262 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 8317
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
||||| ||||||||| || ||| | |||| | ||| | || |||| |||||
Sbjct 8318 CCTTACCAGGCCGGCGTTGGCAGTCTCATTGAAG-TTGAGGCTGTTCGCCGGCGTATTGC 8376
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || |||||||| | |||||||||||||||||
Sbjct 8377 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 8415
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 51 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 108
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 109 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819198761984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |