Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq80 298 9e-79 >seq80 Length=8840 Score = 298 bits (330), Expect = 9e-79 Identities = 237/279 (85%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 8144 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 8201 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8202 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 8261 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 8262 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 8317 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||||||||| || ||| | |||| | ||| | || |||| ||||| Sbjct 8318 CCTTACCAGGCCGGCGTTGGCAGTCTCATTGAAG-TTGAGGCTGTTCGCCGGCGTATTGC 8376 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||||||||||||||||| Sbjct 8377 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 8415 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 51 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 109 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819198761984