Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq83 801 0.0
seq80 801 0.0
seq139 430 4e-118
seq138 399 7e-109
seq84 399 7e-109
seq143 206 8e-51
seq43 98.7 3e-18
>seq83
Length=7934
Score = 801 bits (888), Expect = 0.0
Identities = 481/504 (95%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 1468
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1408
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1407 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 1348
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1347 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCAGCG 1288
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||
Sbjct 1287 CAAGGCTATGCGATCCGTAAAGTTATCATGAATCACCAAAAAGCCCCGAAGGGCATTGGT 1228
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 1227 TTTTTATCTAATAAACACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 1168
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1167 AATTACCACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACGATAACTGATTTAATGA 1108
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1107 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 1049
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 1048 AGACAAGCATATGACTACTGGCAG 1025
Score = 801 bits (888), Expect = 0.0
Identities = 481/504 (95%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6630 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 6689
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6690 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6749
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 6750 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 6809
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 6810 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCAGCG 6869
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||
Sbjct 6870 CAAGGCTATGCGATCCGTAAAGTTATCATGAATCACCAAAAAGCCCCGAAGGGCATTGGT 6929
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 6930 TTTTTATCTAATAAACACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 6989
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 6990 AATTACCACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACGATAACTGATTTAATGA 7049
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7050 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 7108
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 7109 AGACAAGCATATGACTACTGGCAG 7132
>seq80
Length=8840
Score = 801 bits (888), Expect = 0.0
Identities = 481/504 (95%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3387 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 3328
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3327 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3268
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3267 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 3208
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 3207 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCAGCG 3148
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||
Sbjct 3147 CAAGGCTATGCGATCCGTAAAGTTATCATGAATCACCAAAAAGCCCCGAAGGGCATTGGT 3088
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 3087 TTTTTATCTAATAAACACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 3028
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 3027 AATTACCACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACGATAACTGATTTAATGA 2968
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2967 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 2909
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 2908 AGACAAGCATATGACTACTGGCAG 2885
>seq139
Length=1987
Score = 430 bits (476), Expect = 4e-118
Identities = 309/355 (87%), Gaps = 1/355 (0%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1213 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 1272
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| ||||| ||| |||| || | ||||||||||||||||||||||||
Sbjct 1273 CCCGTTACCCGTTGAAACCATAGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 1332
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274
|||||||||| |||| |||| || |||||| ||||||| || || |||||||||| |
Sbjct 1333 AAATTTGAATAAACCGTCGCTAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACC 1392
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| |||| ||| ||||||| || || ||||||||||||||
Sbjct 1393 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCCCTTCCGAAGTCG 1452
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||| | |
Sbjct 1453 GGGTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTT 1512
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||
Sbjct 1513 CAAATAAACGATAACTGATTTGATGAGCTATTCGCAGTTTCACGGTATAATTTGC 1567
>seq138
Length=2045
Score = 399 bits (442), Expect = 7e-109
Identities = 297/346 (86%), Gaps = 1/346 (0%)
Strand=Plus/Minus
Query 98 CTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157
||||||||||| ||||||| ||||||||||| |||||| ||||| ||||| ||||||||
Sbjct 534 CTTCCTTGGATAGGGTAGCCTTTTCTCAGGCTGCCTCTCTGGAATTGAACCTTAATTCCC 475
Query 158 CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217
|||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||||
Sbjct 474 TGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAA 415
Query 218 ATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA-GTTATTATGAATCAC 276
||||||||| ||| |||| || |||||| ||||||| || || | | ||||| |||
Sbjct 414 ATTTGAATGGACCGTCGCTAGCGCAAGGCTATGCGATCTGTAAAAGATTGAATGAACCAC 355
Query 277 CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336
| | ||||||||||| |||| |||||||||||||| || |||||||||||||||
Sbjct 354 CCACAGGCCCCGAAGGGAATTGGGCTTTTATCTAATAAACGCATCCCTTCCGAAGTCGGC 295
Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396
||||| ||||||||| ||||||||||||||||||| |||||| | |||||||| | |||
Sbjct 294 GTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTTCA 235
Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 234 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACGGTAT 189
>seq84
Length=7859
Score = 399 bits (442), Expect = 7e-109
Identities = 297/346 (86%), Gaps = 1/346 (0%)
Strand=Plus/Minus
Query 98 CTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157
||||||||||| ||||||| ||||||||||| |||||| ||||| ||||| ||||||||
Sbjct 7392 CTTCCTTGGATAGGGTAGCCTTTTCTCAGGCTGCCTCTCTGGAATTGAACCTTAATTCCC 7333
Query 158 CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217
|||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||||
Sbjct 7332 TGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAA 7273
Query 218 ATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA-GTTATTATGAATCAC 276
||||||||| ||| |||| || |||||| ||||||| || || | | ||||| |||
Sbjct 7272 ATTTGAATGGACCGTCGCTAGCGCAAGGCTATGCGATCTGTAAAAGATTGAATGAACCAC 7213
Query 277 CAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336
| | ||||||||||| |||| |||||||||||||| || |||||||||||||||
Sbjct 7212 CCACAGGCCCCGAAGGGAATTGGGCTTTTATCTAATAAACGCATCCCTTCCGAAGTCGGC 7153
Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396
||||| ||||||||| ||||||||||||||||||| |||||| | |||||||| | |||
Sbjct 7152 GTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTTCA 7093
Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 7092 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACGGTAT 7047
>seq143
Length=1518
Score = 206 bits (228), Expect = 8e-51
Identities = 297/423 (70%), Gaps = 57/423 (13%)
Strand=Plus/Plus
Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCA 196
|||||||||||||| ||||||||| |||||| | |||||||||||| ||||||
Sbjct 105 CGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCA 164
Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC-CATGCGATT 255
|||||||||||||||||||| || ||||| | |||||| | | || | ||||||
Sbjct 165 TCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATC 224
Query 256 CGTT--AAGTTATTATGAATCACCAA-------------------------GGAGCCCCG 288
| | ||||| || ||||||| |||||| |
Sbjct 225 GGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCCCCGGCCGGAGCCGGG 284
Query 289 AAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-------GAAGTC 333
| || | ||||||||| |||| |||||| ||| | | || ||||
Sbjct 285 AGGGAGCTCACCGGGTTGGTTTTG-ATCTGATAAATGCACGCATCCCCCCCCGGGAAGG- 342
Query 334 GGGGTTT-------TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386
||||| | |||||||||||||||||||||||||| |||||||| |||| |
Sbjct 343 GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG 402
Query 387 GGTA-----CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441
| | | | |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 403 AGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 462
Query 442 TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 522
Query 502 CAG 504
|||
Sbjct 523 CAG 525
>seq43
Length=149448
Score = 98.7 bits (108), Expect = 3e-18
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||||||||| |||||||||||||| ||| | | |||| | | ||||||||| | |
Sbjct 7546 GGGTTTTTAGCATATATTAGCTCTAGAACTACTATAGATATCTAAGCAGTAAGGTATTTT 7605
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA 443
||||||| |||||| ||||||| ||| || | ||||| || |||||
Sbjct 7606 TAAATAAATAATAACTAATTTAATAAGCTTTTTGTAGTTTTACAGTATA 7654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510397643776
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