Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 455 3e-123 seq4 158 1e-33 >seq15 Length=714589 Score = 455 bits (504), Expect = 3e-123 Identities = 1245/1884 (66%), Gaps = 62/1884 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||| || || | | | || ||| |||| | |||||||||||||| ||| Sbjct 177240 TCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATGCCAGTC 177299 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196 ||||| ||||| ||| || || ||||| || | | || |||| | | | ||||| Sbjct 177300 TTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAG-TGATCTTGCCCATAGTAGGCTC 177358 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || |||| ||||||| ||| || || || |||||| || || ||||| Sbjct 177359 CTTCATGTGGATGTTCAGCGACTGAGACTGGTCAATAAAAGCACCACGGTCAGCGGCCAT 177418 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGG--CGACGTA-CCTC 65313 |||||||| | || ||| |||||||||||||||||||| || | || |||| Sbjct 177419 CTCAATGATTCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGTGTCTTTGTCTCCTC 177478 Query 65314 AATTGGAATCTCCTCAATGTCCTGG--ACTGAACCACGACGTGCAATAATGCGATTACGC 65371 | || || | ||| ||||| | ||||| | | || || || || || | Sbjct 177479 A---GGGATGTTGGGAAT--CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTC 177533 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGAT 65427 || ||| ||||||| ||||| |||| ||| | |||| |||| | | |||| Sbjct 177534 ATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGG----TTGAC 177589 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || |||||||| || | || ||||| ||| |||||||||||| ||| || || || Sbjct 177590 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 177649 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | || ||||||| ||||| || | ||| || |||||||||||||| || | | || Sbjct 177650 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 177709 Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACATCG 65606 ||||| |||| |||| | |||| || | || | || |||||| ||| | | Sbjct 177710 CGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAGACG-CCCAGTCCCAGA--G 177766 Query 65607 GTTTATCGTCG--ACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG---- 65660 || | | || |||| | |||||||| | || ||| | || |||| Sbjct 177767 GTCAGTAGGCGTGACATTC------CACATATCGTACTGGAGGATACC----CTGGGATA 177816 Query 65661 CCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCT 65720 | || || || | | | | ||| || |||||| || | | || || Sbjct 177817 CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGCTCCTTTGCGATGTCGCATGAGGAAG 177876 Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780 ||| || ||| || |||||||| || || | || || | || || || Sbjct 177877 TGAGAGCAGCATGGTAGATGGTCTCAAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTG 177936 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 |||| | || | | | || || | || || ||||||||||| || ||||||| Sbjct 177937 ACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCAGCAAGACCTTGAACACCCATACCGA 177996 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || || || || ||| || | ||||| |||||||||| |||| |||| Sbjct 177997 TGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACTTCGA 178056 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959 | || ||||| ||||| || || || || || | ||| | || || ||| ||| Sbjct 178057 TGATCTTGTTCAAGTTGCGGGTGACAACTTGTGTGACTTCGTGGAGCTTCTT-GAAGTCA 178115 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 || || | ||| || | | ||||| || ||||||||||| || Sbjct 178116 AAC--------AC-ACCGGCCTTGTAGT---CGACAAAAGAAGGCAGGGCAAGAGAAGCC 178163 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 | |||||| || || | ||| |||||||| || ||||| ||||| || ||||||| || Sbjct 178164 AAGTTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACAAGTTG 178223 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| ||||| || | |||| || || |||||||| ||||| || |||||||| Sbjct 178224 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAA 178283 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | ||| | || | || ||||| || | ||||| ||||||| |||||| || Sbjct 178284 AGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCTTTTGT 178343 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAA 66258 || || || | | ||||| | ||| | ||||| ||||| ||| ||||| Sbjct 178344 GCGCGAACAGT-CTCGCGGCCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGGGCCTCGAA 178402 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 |||||| | || |||| || | || |||| || || ||||| || | ||| | Sbjct 178403 TTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTT 178462 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | | || ||||| ||| || || ||||| ||||| ||||||||||||||||| Sbjct 178463 GCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATC 178522 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 ||| || || |||||| ||||||| || ||||||| ||| ||||| |||||| ||| Sbjct 178523 GCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTC 178582 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 || |||||||| || |||||||||||||| | || || ||| |||||| ||||| Sbjct 178583 AGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTC 178642 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 ||| |||||||| |||||| | ||||| | ||| || | ||| ||||||||| | || Sbjct 178643 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCC 178702 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 || ||||| ||||| || || || || || ||| || || || |||||||| Sbjct 178703 GTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 178762 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAAT 66675 || || ||||| ||||| ||||| || | | ||| | | |||||||| || Sbjct 178763 GCCAGCGGTCTTGGAGATCAACGCACA---GGTCTTGAGTGTGTCGTAAATGCCGTCGAT 178819 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 | ||| |||| ||| | |||| ||||||| | ||| ||| |||||| | || Sbjct 178820 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGC 178879 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||| | || || | ||||| || ||||| | |||||||||| | ||| ||||| Sbjct 178880 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 178939 Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855 |||| | ||||||| || || ||||| || | ||| ||||| || | || ||| Sbjct 178940 GATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 178999 Query 66856 AGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915 || || ||| | | | | || || | | | || || || || || ||||||| Sbjct 179000 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGCTCGAGTGTCTTGAA 179059 Query 66916 ACCAAAGTACGAGTAATTGAAATC 66939 ||||||| || ||| ||||| || Sbjct 179060 ACCAAAGAACTGGTAGTTGAAGTC 179083 >seq4 Length=2069545 Score = 158 bits (174), Expect = 1e-33 Identities = 561/857 (65%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || ||||| |||||||| | |||||| |||| | ||| Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||| | | |||||| | |||| | | ||| | || | ||||| || Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGAT-GACGAGCGCTTCTTCATCTCCCA 1053698 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| || || || || || || ||||| ||||| | | || || || Sbjct 1053697 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 1053638 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | || || ||| | | ||||| || || |||||||| ||||| || ||||| Sbjct 1053637 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 1053578 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 ||| || ||||| |||| ||| | | |||||||| || ||||| || |||| | | Sbjct 1053577 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 1053518 Query 61386 ACGT--GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG---GAAAGCG 61440 || | || | ||||| |||||||| | || || | | | || ||| || Sbjct 1053517 GCGCAGGTACC--TCTTCAACGCCATCGACAACATCCC--CTGC-ATCCGCAAGAAGGCC 1053463 Query 61441 GATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 || |||||| | |||||| || | | ||| | ||||| | | || | | || Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC-ACATTCGCCAACCGCCTCGTTGC 1053404 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||| || | || |||||| | || ||||| || || || ||| | ||||| ||| | || Sbjct 1053403 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 1053344 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 1053343 GAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGG 1053284 Query 61620 CATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCG 61677 |||||| || || | ||| || || ||| | || || | ||| | || | Sbjct 1053283 CATGCACACCGACTTCGCCTGCCTT-CTCTTC--TCTCT-CCTCGAGAACAAGCCCAGCC 1053228 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 | ||| ||| | | || | ||| || || || || ||||| || ||| Sbjct 1053227 CA-GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGC 1053169 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||||| | || | | || |||||||||| | || |||| || || || || Sbjct 1053168 GACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 1053109 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAA 61854 || || || ||||||||| || | | | || | | || | |||| | | | Sbjct 1053108 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAA---GGTCTACCACGCCACC 1053052 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || |||||||| | ||||| |||| ||| ||||| || || |||||||| Sbjct 1053051 AACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAG 1052992 Query 61915 CGTGTAGGCGACTATCA 61931 || || |||||||| || Sbjct 1052991 CGCGTCGGCGACTACCA 1052975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567244123840