Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2 141 2e-31 seq22 102 1e-19 >seq2 Length=1797335 Score = 141 bits (156), Expect = 2e-31 Identities = 93/103 (90%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||||| ||||| | |||||||||||||||||| ||| | |||||||||||||||| ||| Sbjct 377620 CGACATGGAAGGGTTAAAAAGCAACGTCGCTATTAACACCTGGCTGCCACAAGCCAATTA 377679 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 |||||||||||||||||||||||||||| |||||||||||| Sbjct 377680 TCCCTGTGGTAACTTTTCTGGCACCTCTGATCTCAAATTTCGA 377722 >seq22 Length=683331 Score = 102 bits (112), Expect = 1e-19 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA--CTAAAGGATCGA 266 |||||||||||||||||| | |||||||| |||| ||||||||| | |||||||||| | Sbjct 265081 CCCTGTGGTAACTTTTCTCGTACCTCTAGTCTCACATTTCGAGGAACTCTAAAGGATCTA 265140 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||| ||| ||| | |||||||| Sbjct 265141 TAGGCCACATTTTTATGTTCTGTATTCA 265168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399325024