Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq60 443 6e-122
seq43 432 1e-118
seq56 412 1e-112
seq14 408 1e-111
seq32 295 2e-77
>seq60
Length=5509
Score = 443 bits (490), Expect = 6e-122
Identities = 312/355 (88%), Gaps = 1/355 (0%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 3468 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 3527
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 3528 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 3587
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274
|||||||||| |||| ||||| || |||||| ||||||| || || |||||||||| |
Sbjct 3588 AAATTTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACC 3647
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| |||| ||| ||||||| || || ||||||||||||||
Sbjct 3648 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCCCTTCCGAAGTCG 3707
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||| | |
Sbjct 3708 GGGTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTT 3767
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 3768 CAAATAAACGATAACTGATTTAATGAGCTATTCGCAGTTTCACGGTATAATTTGC 3822
>seq43
Length=96786
Score = 432 bits (478), Expect = 1e-118
Identities = 309/353 (88%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
|||||||||||||| |||||||||||| |||||| |||||| ||||| ||||| ||||||
Sbjct 4047 GCCTTCCTTGGATGGGGTAGCCGTTTCCCAGGCTGCCTCTCTGGAATTGAACCTTAATTC 4106
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 4107 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 4166
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTA-TGAATC 274
||||||||||||||| ||||| || |||||| ||||||| || || | | | |||| |
Sbjct 4167 AAATTTGAATGAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTTGAATGAACC 4226
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| |||| ||||||||||||||| || ||||||||||||||
Sbjct 4227 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTTATCTAATAAATGCATCCCTTCCGAAGTCG 4286
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| ||||||||| ||||||||| ||||||||| |||| | | |||||||| | |
Sbjct 4287 GGGTTTTCAGCATGTATCAGCTCTAGAGTTACCACGGATATCTAAGCGGTAAGGTATTTT 4346
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447
||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 4347 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACGGTAT-GATT 4398
>seq56
Length=8177
Score = 412 bits (456), Expect = 1e-112
Identities = 305/355 (86%), Gaps = 1/355 (0%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 6136 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 6195
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| || |||||| |||| || | ||| ||||||||||||||||||||
Sbjct 6196 CCCGTTACCCGTTGAAACTATGGTAAGCCAATACCTTACTATCGAAAGTTGATAGGGCAG 6255
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274
|||||||||| |||| |||| || ||||| ||||||| || || |||||||||| |
Sbjct 6256 AAATTTGAATAAACCGTCGCTAGCGTAAGGCTATGCGATCTGTAAAAATTATTATGAACC 6315
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| |||| ||| ||||||| || || | ||||||||||||
Sbjct 6316 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCTCTTCCGAAGTCG 6375
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| ||||||||| |||||||||||||| |||| |||||| | |||||||| | |
Sbjct 6376 GGGTTTTCAGCATGTATCAGCTCTAGAATTACTACGGATATCCAAGCGGTAAGGTATTTT 6435
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
|||||||||||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 6436 CAAATAAACGATAACTGATTTAATGAGCTATTCGCAGTTTTACGGTATAATTTGC 6490
>seq14
Length=985265
Score = 408 bits (452), Expect = 1e-111
Identities = 300/348 (86%), Gaps = 1/348 (0%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 3978 GCCTTCCTTGGATAAGGTAGCCGTTTCTCAGGCTGCCTCTCTGGAATTGAACCCTAATTC 4037
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||| | ||||||||| || | || | ||||||||||||||||||||||||
Sbjct 4038 CCCGTTACCCGTTAAAACCATGGTAAGCTAATACCTTACCATCGAAAGTTGATAGGGCAG 4097
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTA-TGAATC 274
||||||||||||||| ||||| || || ||| ||||||| || || | | | |||| |
Sbjct 4098 AAATTTGAATGAACCGTCGCCAGCGCACGGCTATGCGATCTGTAAACATTTGAATGAACC 4157
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| |||| |||||||||||||| || ||||||||||||||
Sbjct 4158 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTTATCTAATAAACGCATCCCTTCCGAAGTCG 4217
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| |||||||||||||||||||| |||||||| |||| | | |||||||| |
Sbjct 4218 GGGTTTTCAGCATGTATTAGCTCTAGAAGTACCACGGATATCTAAGCGGTAAGGTATCTT 4277
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442
|||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 4278 CAAATAAACGATAACTGATTTAATAAGCTATTCGCAGTTTCACGGTAT 4325
>seq32
Length=311982
Score = 295 bits (326), Expect = 2e-77
Identities = 279/355 (79%), Gaps = 1/355 (0%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||||||||| ||| |||||| |||||| ||||| |||||| |||| |||||||||||
Sbjct 324 GCCTTCCTTAGATAGGGTAGCTGTTTCTTAGGCTACCTCTCTAGAATTAAACCCTAATTC 383
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
| ||||| ||| | || || ||| || | || | ||| |||||||||| |||||||||
Sbjct 384 TCTATTACCTGTTAAAACTATAGTAAGCTAATACCTTACTATCGAAAGTTAATAGGGCAG 443
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274
|||||| ||| |||| |||| || |||||| ||| || || || ||||||| || |
Sbjct 444 AAATTTAAATAAACCGTCGCTAGCGCAAGGCTATGTAATCTGTAAAAATTATTATAAACC 503
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334
||| | ||||||||||||| || | ||| ||||||| || || |||||| |||||
Sbjct 504 ACCTAAAAGCCCCGAAGGGCATTAGGCTTTAATCTAATTAACGCATCCCTTCTAAAGTCA 563
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
||||||| |||||||||||||||||||||||| | | |||| | | |||||||| | |
Sbjct 564 GGGTTTTCAGCATGTATTAGCTCTAGAATTACTATAGATATCTAAGCGGTAAGGTATTTT 623
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
|||||||| |||||| ||||||| ||| ||||||||||| || ||||| ||||
Sbjct 624 TAAATAAACAATAACTAATTTAATAAGCTATTCGCAGTTTTACAGTATAATTTGC 678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510398806784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |