Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq60 443 6e-122 seq43 432 1e-118 seq56 412 1e-112 seq14 408 1e-111 seq32 295 2e-77 >seq60 Length=5509 Score = 443 bits (490), Expect = 6e-122 Identities = 312/355 (88%), Gaps = 1/355 (0%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 3468 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 3527 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||| Sbjct 3528 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 3587 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274 |||||||||| |||| ||||| || |||||| ||||||| || || |||||||||| | Sbjct 3588 AAATTTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACC 3647 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334 ||| | ||||||||||||| |||| ||| ||||||| || || |||||||||||||| Sbjct 3648 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCCCTTCCGAAGTCG 3707 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 ||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||| | | Sbjct 3708 GGGTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTT 3767 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 |||||||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 3768 CAAATAAACGATAACTGATTTAATGAGCTATTCGCAGTTTCACGGTATAATTTGC 3822 >seq43 Length=96786 Score = 432 bits (478), Expect = 1e-118 Identities = 309/353 (88%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||| |||||||||||| |||||| |||||| ||||| ||||| |||||| Sbjct 4047 GCCTTCCTTGGATGGGGTAGCCGTTTCCCAGGCTGCCTCTCTGGAATTGAACCTTAATTC 4106 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||| Sbjct 4107 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 4166 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTA-TGAATC 274 ||||||||||||||| ||||| || |||||| ||||||| || || | | | |||| | Sbjct 4167 AAATTTGAATGAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTTGAATGAACC 4226 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334 ||| | ||||||||||||| |||| ||||||||||||||| || |||||||||||||| Sbjct 4227 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTTATCTAATAAATGCATCCCTTCCGAAGTCG 4286 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 ||||||| ||||||||| ||||||||| ||||||||| |||| | | |||||||| | | Sbjct 4287 GGGTTTTCAGCATGTATCAGCTCTAGAGTTACCACGGATATCTAAGCGGTAAGGTATTTT 4346 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 4347 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACGGTAT-GATT 4398 >seq56 Length=8177 Score = 412 bits (456), Expect = 1e-112 Identities = 305/355 (86%), Gaps = 1/355 (0%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 6136 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 6195 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||||| || |||||| |||| || | ||| |||||||||||||||||||| Sbjct 6196 CCCGTTACCCGTTGAAACTATGGTAAGCCAATACCTTACTATCGAAAGTTGATAGGGCAG 6255 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274 |||||||||| |||| |||| || ||||| ||||||| || || |||||||||| | Sbjct 6256 AAATTTGAATAAACCGTCGCTAGCGTAAGGCTATGCGATCTGTAAAAATTATTATGAACC 6315 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334 ||| | ||||||||||||| |||| ||| ||||||| || || | |||||||||||| Sbjct 6316 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCTCTTCCGAAGTCG 6375 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 ||||||| ||||||||| |||||||||||||| |||| |||||| | |||||||| | | Sbjct 6376 GGGTTTTCAGCATGTATCAGCTCTAGAATTACTACGGATATCCAAGCGGTAAGGTATTTT 6435 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 |||||||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 6436 CAAATAAACGATAACTGATTTAATGAGCTATTCGCAGTTTTACGGTATAATTTGC 6490 >seq14 Length=985265 Score = 408 bits (452), Expect = 1e-111 Identities = 300/348 (86%), Gaps = 1/348 (0%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 3978 GCCTTCCTTGGATAAGGTAGCCGTTTCTCAGGCTGCCTCTCTGGAATTGAACCCTAATTC 4037 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||| | ||||||||| || | || | |||||||||||||||||||||||| Sbjct 4038 CCCGTTACCCGTTAAAACCATGGTAAGCTAATACCTTACCATCGAAAGTTGATAGGGCAG 4097 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTA-TGAATC 274 ||||||||||||||| ||||| || || ||| ||||||| || || | | | |||| | Sbjct 4098 AAATTTGAATGAACCGTCGCCAGCGCACGGCTATGCGATCTGTAAACATTTGAATGAACC 4157 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334 ||| | ||||||||||||| |||| |||||||||||||| || |||||||||||||| Sbjct 4158 ACCCAAAAGCCCCGAAGGGCATTGGGCTTTTATCTAATAAACGCATCCCTTCCGAAGTCG 4217 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 ||||||| |||||||||||||||||||| |||||||| |||| | | |||||||| | Sbjct 4218 GGGTTTTCAGCATGTATTAGCTCTAGAAGTACCACGGATATCTAAGCGGTAAGGTATCTT 4277 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442 |||||||||||||||||||||||| ||| |||||||||||||| |||| Sbjct 4278 CAAATAAACGATAACTGATTTAATAAGCTATTCGCAGTTTCACGGTAT 4325 >seq32 Length=311982 Score = 295 bits (326), Expect = 2e-77 Identities = 279/355 (79%), Gaps = 1/355 (0%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||| ||| |||||| |||||| ||||| |||||| |||| ||||||||||| Sbjct 324 GCCTTCCTTAGATAGGGTAGCTGTTTCTTAGGCTACCTCTCTAGAATTAAACCCTAATTC 383 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 | ||||| ||| | || || ||| || | || | ||| |||||||||| ||||||||| Sbjct 384 TCTATTACCTGTTAAAACTATAGTAAGCTAATACCTTACTATCGAAAGTTAATAGGGCAG 443 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAG-TTATTATGAATC 274 |||||| ||| |||| |||| || |||||| ||| || || || ||||||| || | Sbjct 444 AAATTTAAATAAACCGTCGCTAGCGCAAGGCTATGTAATCTGTAAAAATTATTATAAACC 503 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCG 334 ||| | ||||||||||||| || | ||| ||||||| || || |||||| ||||| Sbjct 504 ACCTAAAAGCCCCGAAGGGCATTAGGCTTTAATCTAATTAACGCATCCCTTCTAAAGTCA 563 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 ||||||| |||||||||||||||||||||||| | | |||| | | |||||||| | | Sbjct 564 GGGTTTTCAGCATGTATTAGCTCTAGAATTACTATAGATATCTAAGCGGTAAGGTATTTT 623 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 |||||||| |||||| ||||||| ||| ||||||||||| || ||||| |||| Sbjct 624 TAAATAAACAATAACTAATTTAATAAGCTATTCGCAGTTTTACAGTATAATTTGC 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510398806784