Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16 479 2e-130 seq5 161 8e-35 >seq16 Length=840418 Score = 479 bits (530), Expect = 2e-130 Identities = 1251/1884 (66%), Gaps = 62/1884 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||| || || | | | || ||| |||| | |||||||||||||| ||| Sbjct 25750 TCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATGCCAGTC 25809 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196 ||||| ||||| ||| || || ||||| || | | || |||| | | | ||||| Sbjct 25810 TTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAG-TGATCTTGCCCATAGTAGGCTC 25868 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||||| ||| || ||| || |||||| || || ||||| Sbjct 25869 CTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCAT 25928 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGG--CGACGTA-CCTC 65313 |||||||| | || ||| |||||||||||||||||||| ||| | || |||| Sbjct 25929 CTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTC 25988 Query 65314 AATTGGAATCTCCTCAATGTCCTGG--ACTGAACCACGACGTGCAATAATGCGATTACGC 65371 | || || | ||| ||||| | ||||| | | || || || || || | Sbjct 25989 A---GGGATGTTGGGAAT--CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTC 26043 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGAT 65427 || ||| ||||||| ||||| |||| ||| | |||| |||| | | |||| Sbjct 26044 ATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGG----TTGAC 26099 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || |||||||| || | || ||||| ||| |||||||||||| ||| || || || Sbjct 26100 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 26159 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | || ||||||| ||||| || | ||| || |||||||||||||| || | | || Sbjct 26160 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 26219 Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACA--T 65604 ||||| || | |||| | |||| || | || | || |||||| ||| | | Sbjct 26220 CGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACG-CCCAGTCCCAGAGGT 26278 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG---- 65660 | || | || ||||| | |||||||| | || ||| | || |||| Sbjct 26279 CAGTAGGT-GT-GACATTC------CACATATCGTACTGGAGGATACC----CTGGGATA 26326 Query 65661 CCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCT 65720 | || || || | | | | ||| || ||||| || | | || || Sbjct 26327 CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAG 26386 Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780 ||| || ||| || ||||||||||| || | || || | || || || Sbjct 26387 TGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTG 26446 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 |||| | || | | | || || | ||||| ||||||||||| || ||||||| Sbjct 26447 ACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGA 26506 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || || || || ||| || | ||||| |||||||||| |||| |||| Sbjct 26507 TGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGA 26566 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959 | || ||||| ||||| || || || || || | ||| | || || ||| ||| Sbjct 26567 TGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT-GAAGTCA 26625 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 || ||| ||| || | | ||||| || ||||||||||| || Sbjct 26626 AAC--------ACGC-CGGCCTTGTAGT---CGACAAAAGAAGGCAGGGCAAGAGAAGCC 26673 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 | |||||| ||||| | ||| ||||||||||| ||||| ||||| || |||||||| || Sbjct 26674 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 26733 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| ||||| || | |||| || || |||||||| ||||| || |||||||| Sbjct 26734 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 26793 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | ||| | || | || ||||| || | ||||| |||||||| |||||| || Sbjct 26794 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 26853 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAA 66258 || || || | | |||| | ||| | ||||| ||||| || |||||| Sbjct 26854 GCGCGAACAGT-CTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAA 26912 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 |||||| | || |||| || | || |||| || || |||||||| | ||| | Sbjct 26913 TTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTT 26972 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | | || ||||| ||| || || ||||| ||||| || |||||||||||||| Sbjct 26973 GCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATC 27032 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 ||| || || |||||| ||||||| || ||||||| ||| ||||| |||||| ||| Sbjct 27033 GCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTC 27092 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 || |||||||| || |||||||||||||| | || ||| ||| |||||| ||||| Sbjct 27093 AGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTC 27152 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 ||| |||||||| |||||| | ||||| | ||| || | ||| || |||||| | || Sbjct 27153 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 27212 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 || ||||| ||||| || || || || || ||| || || || |||||||| Sbjct 27213 GTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 27272 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAAT 66675 || || ||||| ||||| ||||| || | | ||| | | |||||||| || Sbjct 27273 GCCAGCGGTCTTGGAGATCAACGCACA---GGTCTTGAGTGTGTCGTAAATGCCGTCGAT 27329 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 | ||| |||| ||| | |||| ||||||| | ||| ||| |||||| | || Sbjct 27330 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGC 27389 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||| | || || | ||||| || ||||| | |||||||||| | ||| ||||| Sbjct 27390 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 27449 Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855 |||| | || |||| ||||| ||||| || | ||| ||||| || | || ||| Sbjct 27450 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 27509 Query 66856 AGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915 || || ||| | | | | || || | | | || || ||||| || ||||||| Sbjct 27510 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAA 27569 Query 66916 ACCAAAGTACGAGTAATTGAAATC 66939 ||||||| || ||| ||||| || Sbjct 27570 ACCAAAGAACTGGTAGTTGAAGTC 27593 >seq5 Length=1540376 Score = 161 bits (178), Expect = 8e-35 Identities = 562/857 (66%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || ||||| |||||||| | |||||| |||| | ||| Sbjct 776247 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 776188 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||| | | |||||| | |||| | | ||| | || | ||||| || Sbjct 776187 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGAT-GACGAGCGCTTCTTCATCTCCCA 776129 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| || || || || || || ||||| ||||| | | || || || Sbjct 776128 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 776069 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | || || ||| | | ||||| || || |||||||| ||||| || ||||| Sbjct 776068 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 776009 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 ||| || ||||| |||| ||| | | |||||||| || |||||||| |||| | | Sbjct 776008 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAAGCA 775949 Query 61386 ACGT--GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG---GAAAGCG 61440 || | || | ||||| |||||||| | || || | | | || ||| || Sbjct 775948 GCGCAGGTACC--TCTTCAACGCCATCGACAACATCCC--CTGC-ATCCGCAAGAAGGCC 775894 Query 61441 GATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 || |||||| | |||||| || | | ||| | ||||| | | || | | || Sbjct 775893 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC-ACATTCGCCAACCGCCTTGTTGC 775835 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||| || | || |||||| | || ||||| || || || ||| | ||||| ||| | || Sbjct 775834 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 775775 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 775774 GAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGG 775715 Query 61620 CATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCG 61677 |||||| || || | ||| || || ||| | || || | ||| | || | Sbjct 775714 CATGCACACCGACTTCGCCTGCCTT-CTCTTC--TCTCT-CCTCGAGAACAAGCCCAGCC 775659 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 | ||| ||| | | || | ||| || || || || ||||| || ||| Sbjct 775658 CA-GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGC 775600 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||||| | || | | || |||||||||| | || |||| || || || || Sbjct 775599 GACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 775540 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAA 61854 || || || ||||||||| || | | | || | | || | |||| | | | Sbjct 775539 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAA---GGTCTACCACGCCACC 775483 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || |||||||| | ||||| |||| ||| ||||| || || |||||||| Sbjct 775482 AACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAG 775423 Query 61915 CGTGTAGGCGACTATCA 61931 || || |||||||| || Sbjct 775422 CGCGTCGGCGACTACCA 775406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567617216560