Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq430 917 0.0 seq170 309 1e-81 >seq430 Length=7832 Score = 917 bits (1016), Expect = 0.0 Identities = 618/686 (90%), Gaps = 5/686 (1%) Strand=Plus/Minus Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59 |||||| || |||| | ||||||| |||| |||||||||||||||||||||||||||| Sbjct 3809 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 3750 Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3749 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 3690 Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 3689 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 3630 Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239 |||||||||||||||||||||||||| |||||||||| |||||||||| |||| Sbjct 3629 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 3570 Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299 |||||||||||||||| | |||||||||||||| | ||||||| ||||||||| | Sbjct 3569 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 3510 Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357 | | | || | || ||||||| || |||||| || | || || | || ||||| Sbjct 3509 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAGG--GGAGACGACATACTACCAGCCTG 3452 Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417 ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 3451 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 3392 Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 3391 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 3332 Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3331 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 3272 Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3271 CGGAAGGATTTGAGTAAGAGCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGA 3212 Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3211 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 3152 Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||| |||||||||| Sbjct 3151 ATCGTCAAATTTGGGCATAGGGGCGA 3126 >seq170 Length=20925 Score = 309 bits (342), Expect = 1e-81 Identities = 212/239 (89%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 390 CGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGA 449 |||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||| Sbjct 20925 CGTAATGGCGGTAAGTGGCCCATCTCGAAACACGGACCAAGGAGTCTAACATCTATGCGA 20866 Query 450 GTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGG 509 ||||||||||||||| |||| ||||||||| |||| ||||||||||| |||||| ||| Sbjct 20865 GTGTTTGGGTGTCAAGCCCGAGCGCGTAATAAAAGCAAACGGAGGTGGAAACCCGCAAGG 20806 Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||| ||||||| ||||| ||||||||||| |||||||||||||||||| |||||| | Sbjct 20805 GTGCACTATCGACCAATCCTAATGTCTTCGGAAGGATTTGAGTAAGAGCATGGCTGTTAG 20746 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||| || |||||||| ||||||||||||||||||| |||||||| || || Sbjct 20745 GACCCGGAAGATAGTAAACTATGCTTGAATAGGGTGAAGCCAGATGAAACTCTCGTCGA 20687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079988266850