Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq430 917 0.0
seq170 309 1e-81
>seq430
Length=7832
Score = 917 bits (1016), Expect = 0.0
Identities = 618/686 (90%), Gaps = 5/686 (1%)
Strand=Plus/Minus
Query 1 TACGTGACCGGTGGCC-TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAAT 59
|||||| || |||| | ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 3809 TACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAAT 3750
Query 60 GCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3749 GCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGC 3690
Query 120 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTG 179
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 3689 GCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTG 3630
Query 180 AAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCT 239
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 3629 AAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTACAGTTGCTCATCCGGGTTTC 3570
Query 240 CGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCC 299
|||||||||||||||| | |||||||||||||| | ||||||| ||||||||| |
Sbjct 3569 TACCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCT 3510
Query 300 CGGGAATGTGGCCCCCTTCGGGG-GGTGTTATAGCCCGGGGTGGA-ATGCGGCCCGCCTG 357
| | | || | || ||||||| || |||||| || | || || | || |||||
Sbjct 3509 CTGTCACGTACCTCCTTTCGGGGAGGCCTTATAGG--GGAGACGACATACTACCAGCCTG 3452
Query 358 GACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGG 417
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 3451 GACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGA 3392
Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTA 477
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 3391 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTA 3332
Query 478 ATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT 537
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3331 ATGAAAGTGAACGGAGGTGGGAACCCGCAAGGGTGCACCATCGACCGATCCTGATGTCTT 3272
Query 538 CGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA 597
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 3271 CGGAAGGATTTGAGTAAGAGCATGGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGA 3212
Query 598 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3211 ATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCG 3152
Query 658 ATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||||||| ||||||||||
Sbjct 3151 ATCGTCAAATTTGGGCATAGGGGCGA 3126
>seq170
Length=20925
Score = 309 bits (342), Expect = 1e-81
Identities = 212/239 (89%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 390 CGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGA 449
|||||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 20925 CGTAATGGCGGTAAGTGGCCCATCTCGAAACACGGACCAAGGAGTCTAACATCTATGCGA 20866
Query 450 GTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGG 509
||||||||||||||| |||| ||||||||| |||| ||||||||||| |||||| |||
Sbjct 20865 GTGTTTGGGTGTCAAGCCCGAGCGCGTAATAAAAGCAAACGGAGGTGGAAACCCGCAAGG 20806
Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569
|||||| ||||||| ||||| ||||||||||| |||||||||||||||||| |||||| |
Sbjct 20805 GTGCACTATCGACCAATCCTAATGTCTTCGGAAGGATTTGAGTAAGAGCATGGCTGTTAG 20746
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||| ||||| || |||||||| ||||||||||||||||||| |||||||| || ||
Sbjct 20745 GACCCGGAAGATAGTAAACTATGCTTGAATAGGGTGAAGCCAGATGAAACTCTCGTCGA 20687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079988266850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |