Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq430 801 0.0
seq94 392 1e-106
seq286 244 3e-62
seq547 214 5e-53
seq278 206 8e-51
seq93 197 4e-48
seq191 91.5 4e-16
>seq430
Length=7832
Score = 801 bits (888), Expect = 0.0
Identities = 481/504 (95%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5799 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5858
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5859 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5918
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5919 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5978
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| || | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 5979 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCAGCG 6038
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
|||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||
Sbjct 6039 CAAGGCTATGCGATCCGTAAAGTTATCATGAATCACCAAAAAGCCCCGAAGGGCATTGGT 6098
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 6099 TTTTTATCTAATAAACACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 6158
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 6159 AATTACCACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACGATAACTGATTTAATGA 6218
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 6219 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6277
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 6278 AGACAAGCATATGACTACTGGCAG 6301
>seq94
Length=1005
Score = 392 bits (434), Expect = 1e-106
Identities = 264/295 (89%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||||||||| |||| ||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 297 GCCTTCCTTAGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTAGAATTAAACCCTAATTC 238
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||| | ||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 237 CCCGTTACCCGTTAAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 178
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275
||||||||||||||| ||||| || |||||| ||||||| ||| ||||||| ||||||||
Sbjct 177 AAATTTGAATGAACCGTCGCCAGCGCAAGGCTATGCGATCCGTAAAGTTATCATGAATCA 118
Query 276 CCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG 335
|||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 117 CCAAAAAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAACACATCCCTTCCGAAGTCGG 58
Query 336 GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390
| |||| ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 57 GATTTTCAGCATGTATTAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTA 3
>seq286
Length=1408
Score = 244 bits (270), Expect = 3e-62
Identities = 181/210 (86%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||||||||| |||| |||||||||||| |||||| |||||| |||| ||||| ||||||
Sbjct 210 GCCTTCCTTAGATGGGGTAGCCGTTTCCCAGGCTGCCTCTCTAGAATTGAACCTTAATTC 151
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 150 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 91
Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT-TAAGTTATTATGAATC 274
|||||||||| |||| ||||| || |||||| ||||||| || || |||||||||| |
Sbjct 90 AAATTTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACC 31
Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304
||| | ||||||||||||| |||| ||||
Sbjct 30 ACCCAAAAGCCCCGAAGGGCATTGGCTTTT 1
>seq547
Length=778
Score = 214 bits (236), Expect = 5e-53
Identities = 158/183 (86%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219
||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||||||
Sbjct 1 TTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAAT 60
Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT-TAAGTTATTATGAATCACCA 278
|||||| |||| ||||| || |||||| ||||||| || || |||||||||| ||||
Sbjct 61 TTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACCACCC 120
Query 279 AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGT 338
| ||||||||||||| || | ||||||||||||||| || ||||||||||||||||||
Sbjct 121 AAAAGCCCCGAAGGGCATTAGGCTTTTATCTAATAAATGCATCCCTTCCGAAGTCGGGGT 180
Query 339 TTT 341
|||
Sbjct 181 TTT 183
Score = 122 bits (134), Expect = 3e-25
Identities = 94/112 (84%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397
|||| ||||||||| ||||||||| ||||||||| |||| | | |||||||| | | ||
Sbjct 384 TTTTCAGCATGTATCAGCTCTAGAGTTACCACGGATATCTAAGCGGTAAGGTATTTTTAA 443
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
|||||| |||||| ||||||| ||||||||||||||| || ||||| ||||
Sbjct 444 ATAAACAATAACTAATTTAATAAGCCATTCGCAGTTTTACGGTATAATTTGC 495
>seq278
Length=1373
Score = 206 bits (228), Expect = 8e-51
Identities = 146/167 (87%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 283 GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTT 342
|||||||||||| |||| ||| ||||||| || || |||||||||||||||||||||
Sbjct 1373 GCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCCCTTCCGAAGTCGGGGTTTTC 1314
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402
||||||||| ||||||||||||||||||| |||||| | |||||||| | |||||||||
Sbjct 1313 AGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTTCAAATAAA 1254
Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449
||||||||||||| |||||| |||||||||||||| ||||| ||||
Sbjct 1253 CGATAACTGATTTGATGAGCTATTCGCAGTTTCACGGTATAATTTGC 1207
>seq93
Length=2408
Score = 197 bits (218), Expect = 4e-48
Identities = 124/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 872 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 813
Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
||||||||||||||| ||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 812 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 753
Query 216 AAATTTGAATGAAC 229
|||||||||| |||
Sbjct 752 AAATTTGAATAAAC 739
Score = 161 bits (178), Expect = 3e-37
Identities = 109/122 (89%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 328 GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387
|||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||
Sbjct 736 GAAGTCGGGGTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAG 677
Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447
||| | |||||||||||||||||||||| |||||| |||||||||||||| ||||| ||
Sbjct 676 GTATTTTCAAATAAACGATAACTGATTTGATGAGCTATTCGCAGTTTCACGGTATAATTT 617
Query 448 GC 449
||
Sbjct 616 GC 615
>seq191
Length=1278
Score = 91.5 bits (100), Expect = 4e-16
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||||||||| || |||||||||||| |||||| |||||| ||||| ||||| ||||||
Sbjct 1204 GCCTTCCTTA-ATAGGGTAGCCGTTTCCCAGGCTGCCTCTCTGGAATTGAACCTTAATTC 1262
Query 156 CCCGTTACCCGTTGA 170
|||||||||||||||
Sbjct 1263 CCCGTTACCCGTTGA 1277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510391738112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |