Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq430 801 0.0 seq94 392 1e-106 seq286 244 3e-62 seq547 214 5e-53 seq278 206 8e-51 seq93 197 4e-48 seq191 91.5 4e-16 >seq430 Length=7832 Score = 801 bits (888), Expect = 0.0 Identities = 481/504 (95%), Gaps = 1/504 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5799 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 5858 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5859 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5918 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5919 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 5978 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | ||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 5979 AGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCGTCGCCAGCG 6038 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||| Sbjct 6039 CAAGGCTATGCGATCCGTAAAGTTATCATGAATCACCAAAAAGCCCCGAAGGGCATTGGT 6098 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||| Sbjct 6099 TTTTTATCTAATAAACACATCCCTTCCGAAGTCGGGATTTTCAGCATGTATTAGCTCTAG 6158 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 6159 AATTACCACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACGATAACTGATTTAATGA 6218 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 6219 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 6277 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 6278 AGACAAGCATATGACTACTGGCAG 6301 >seq94 Length=1005 Score = 392 bits (434), Expect = 1e-106 Identities = 264/295 (89%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||| Sbjct 297 GCCTTCCTTAGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTAGAATTAAACCCTAATTC 238 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||| | ||||||||| |||| || | |||||||||||||||||||||||| Sbjct 237 CCCGTTACCCGTTAAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 178 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 ||||||||||||||| ||||| || |||||| ||||||| ||| ||||||| |||||||| Sbjct 177 AAATTTGAATGAACCGTCGCCAGCGCAAGGCTATGCGATCCGTAAAGTTATCATGAATCA 118 Query 276 CCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG 335 |||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| Sbjct 117 CCAAAAAGCCCCGAAGGGCATTGGTTTTTTATCTAATAAACACATCCCTTCCGAAGTCGG 58 Query 336 GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 | |||| ||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 57 GATTTTCAGCATGTATTAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTA 3 >seq286 Length=1408 Score = 244 bits (270), Expect = 3e-62 Identities = 181/210 (86%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||| |||| |||||||||||| |||||| |||||| |||| ||||| |||||| Sbjct 210 GCCTTCCTTAGATGGGGTAGCCGTTTCCCAGGCTGCCTCTCTAGAATTGAACCTTAATTC 151 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||| Sbjct 150 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 91 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT-TAAGTTATTATGAATC 274 |||||||||| |||| ||||| || |||||| ||||||| || || |||||||||| | Sbjct 90 AAATTTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACC 31 Query 275 ACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 ||| | ||||||||||||| |||| |||| Sbjct 30 ACCCAAAAGCCCCGAAGGGCATTGGCTTTT 1 >seq547 Length=778 Score = 214 bits (236), Expect = 5e-53 Identities = 158/183 (86%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 ||||||||||| ||||||||| |||| || | |||||||||||||||||||||||||||| Sbjct 1 TTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAGAAAT 60 Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT-TAAGTTATTATGAATCACCA 278 |||||| |||| ||||| || |||||| ||||||| || || |||||||||| |||| Sbjct 61 TTGAATAAACCGTCGCCAGCGCAAGGCTATGCGATCTGTAAAAATTATTATGAACCACCC 120 Query 279 AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGT 338 | ||||||||||||| || | ||||||||||||||| || |||||||||||||||||| Sbjct 121 AAAAGCCCCGAAGGGCATTAGGCTTTTATCTAATAAATGCATCCCTTCCGAAGTCGGGGT 180 Query 339 TTT 341 ||| Sbjct 181 TTT 183 Score = 122 bits (134), Expect = 3e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 |||| ||||||||| ||||||||| ||||||||| |||| | | |||||||| | | || Sbjct 384 TTTTCAGCATGTATCAGCTCTAGAGTTACCACGGATATCTAAGCGGTAAGGTATTTTTAA 443 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 |||||| |||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 444 ATAAACAATAACTAATTTAATAAGCCATTCGCAGTTTTACGGTATAATTTGC 495 >seq278 Length=1373 Score = 206 bits (228), Expect = 8e-51 Identities = 146/167 (87%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 283 GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTT 342 |||||||||||| |||| ||| ||||||| || || ||||||||||||||||||||| Sbjct 1373 GCCCCGAAGGGCATTGGGCTTTGATCTAATCAACGCATCCCTTCCGAAGTCGGGGTTTTC 1314 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||||||||| ||||||||||||||||||| |||||| | |||||||| | ||||||||| Sbjct 1313 AGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAGGTATTTTCAAATAAA 1254 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 ||||||||||||| |||||| |||||||||||||| ||||| |||| Sbjct 1253 CGATAACTGATTTGATGAGCTATTCGCAGTTTCACGGTATAATTTGC 1207 >seq93 Length=2408 Score = 197 bits (218), Expect = 4e-48 Identities = 124/134 (93%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 872 GCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTACCTCTCTGGAATTGAACCCTAATTC 813 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||| Sbjct 812 CCCGTTACCCGTTGAAACCATGGTAAGCCAATACCTTACCATCGAAAGTTGATAGGGCAG 753 Query 216 AAATTTGAATGAAC 229 |||||||||| ||| Sbjct 752 AAATTTGAATAAAC 739 Score = 161 bits (178), Expect = 3e-37 Identities = 109/122 (89%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 328 GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG 387 |||||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||||| Sbjct 736 GAAGTCGGGGTTTTCAGCATGTATCAGCTCTAGAATTACCACGGATATCCAAGCGGTAAG 677 Query 388 GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT 447 ||| | |||||||||||||||||||||| |||||| |||||||||||||| ||||| || Sbjct 676 GTATTTTCAAATAAACGATAACTGATTTGATGAGCTATTCGCAGTTTCACGGTATAATTT 617 Query 448 GC 449 || Sbjct 616 GC 615 >seq191 Length=1278 Score = 91.5 bits (100), Expect = 4e-16 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||||||||| || |||||||||||| |||||| |||||| ||||| ||||| |||||| Sbjct 1204 GCCTTCCTTA-ATAGGGTAGCCGTTTCCCAGGCTGCCTCTCTGGAATTGAACCTTAATTC 1262 Query 156 CCCGTTACCCGTTGA 170 ||||||||||||||| Sbjct 1263 CCCGTTACCCGTTGA 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510391738112