Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq88 479 2e-130
seq23 158 1e-33
>seq88
Length=290544
Score = 479 bits (530), Expect = 2e-130
Identities = 1251/1884 (66%), Gaps = 62/1884 (3%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
||||| ||||| || || | | | || ||| |||| | |||||||||||||| |||
Sbjct 178849 TCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATGCCAGTC 178908
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196
||||| ||||| ||| || || ||||| || | | || |||| | | | |||||
Sbjct 178909 TTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAG-TGATCTTGCCCATAGTAGGCTC 178967
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| || || || | ||||||| ||| || ||| || |||||| || || |||||
Sbjct 178968 CTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCAT 179027
Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGG--CGACGTA-CCTC 65313
|||||||| | || ||| |||||||||||||||||||| ||| | || ||||
Sbjct 179028 CTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTC 179087
Query 65314 AATTGGAATCTCCTCAATGTCCTGG--ACTGAACCACGACGTGCAATAATGCGATTACGC 65371
| || || | ||| ||||| | ||||| | | || || || || || |
Sbjct 179088 A---GGGATGTTGGGAAT--CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTC 179142
Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGAT 65427
|| ||| ||||||| ||||| |||| ||| | |||| |||| | | ||||
Sbjct 179143 ATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGG----TTGAC 179198
Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487
|| |||||||| || | || ||||| ||| |||||||||||| ||| || || ||
Sbjct 179199 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 179258
Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547
| | || ||||||| ||||| || | ||| || |||||||||||||| || | | ||
Sbjct 179259 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 179318
Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACA--T 65604
||||| || | |||| | |||| || | || | || |||||| ||| | |
Sbjct 179319 CGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACG-CCCAGTCCCAGAGGT 179377
Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG---- 65660
| || | || ||||| | |||||||| | || ||| | || ||||
Sbjct 179378 CAGTAGGT-GT-GACATTC------CACATATCGTACTGGAGGATACC----CTGGGATA 179425
Query 65661 CCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCT 65720
| || || || | | | | ||| || ||||| || | | || ||
Sbjct 179426 CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAG 179485
Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780
||| || ||| || ||||||||||| || | || || | || || ||
Sbjct 179486 TGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTG 179545
Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840
|||| | || | | | || || | ||||| ||||||||||| || |||||||
Sbjct 179546 ACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGA 179605
Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900
|||| || || || || ||| || | ||||| |||||||||| |||| ||||
Sbjct 179606 TGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGA 179665
Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959
| || ||||| ||||| || || || || || | ||| | || || ||| |||
Sbjct 179666 TGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT-GAAGTCA 179724
Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019
|| ||| ||| || | | ||||| || ||||||||||| ||
Sbjct 179725 AAC--------ACGC-CGGCCTTGTAGT---CGACAAAAGAAGGCAGGGCAAGAGAAGCC 179772
Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079
| |||||| ||||| | ||| ||||||||||| ||||| ||||| || |||||||| ||
Sbjct 179773 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 179832
Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139
|| ||| ||||| || | |||| || || |||||||| ||||| || ||||||||
Sbjct 179833 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 179892
Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199
| ||| | || | || ||||| || | ||||| |||||||| |||||| ||
Sbjct 179893 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 179952
Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAA 66258
|| || || | | |||| | ||| | ||||| ||||| || ||||||
Sbjct 179953 GCGCGAACAGT-CTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAA 180011
Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318
|||||| | || |||| || | || |||| || || |||||||| | ||| |
Sbjct 180012 TTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTT 180071
Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378
|| | | || ||||| ||| || || ||||| ||||| || ||||||||||||||
Sbjct 180072 GCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATC 180131
Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438
||| || || |||||| ||||||| || ||||||| ||| ||||| |||||| |||
Sbjct 180132 GCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTC 180191
Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498
|| |||||||| || |||||||||||||| | || ||| ||| |||||| |||||
Sbjct 180192 AGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTC 180251
Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558
||| |||||||| |||||| | ||||| | ||| || | ||| || |||||| | ||
Sbjct 180252 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 180311
Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618
|| ||||| ||||| || || || || || ||| || || || ||||||||
Sbjct 180312 GTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 180371
Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAAT 66675
|| || ||||| ||||| ||||| || | | ||| | | |||||||| ||
Sbjct 180372 GCCAGCGGTCTTGGAGATCAACGCACA---GGTCTTGAGTGTGTCGTAAATGCCGTCGAT 180428
Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735
| ||| |||| ||| | |||| ||||||| | ||| ||| |||||| | ||
Sbjct 180429 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGC 180488
Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795
||| | || || | ||||| || ||||| | |||||||||| | ||| |||||
Sbjct 180489 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 180548
Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855
|||| | || |||| ||||| ||||| || | ||| ||||| || | || |||
Sbjct 180549 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 180608
Query 66856 AGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915
|| || ||| | | | | || || | | | || || ||||| || |||||||
Sbjct 180609 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAA 180668
Query 66916 ACCAAAGTACGAGTAATTGAAATC 66939
||||||| || ||| ||||| ||
Sbjct 180669 ACCAAAGAACTGGTAGTTGAAGTC 180692
>seq23
Length=86929
Score = 158 bits (174), Expect = 1e-33
Identities = 561/857 (65%), Gaps = 30/857 (4%)
Strand=Plus/Minus
Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149
|||| |||||||| ||||| || ||||| |||||||| | |||||| |||| | |||
Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271
Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205
|| ||| | | |||||| | |||| | | ||| | || | ||||| ||
Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGAT-GACGAGCGCTTCTTCATCTCCCA 35212
Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265
|| | || ||||| || || || || || || ||||| ||||| | | || || ||
Sbjct 35211 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 35152
Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| | || || ||| | | ||||| || || |||||||| ||||| || |||||
Sbjct 35151 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 35092
Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385
||| || ||||| |||| ||| | | |||||||| || ||||| || |||| | |
Sbjct 35091 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 35032
Query 61386 ACGT--GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG---GAAAGCG 61440
|| | || | ||||| |||||||| | || || | | | || ||| ||
Sbjct 35031 GCGCAGGTACC--TCTTCAACGCCATCGACAACATCCC--CTGC-ATCCGCAAGAAGGCC 34977
Query 61441 GATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499
|| |||||| | |||||| || | | ||| | ||||| | | || | | ||
Sbjct 34976 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC-ACATTCGCCAACCGCCTCGTTGC 34918
Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559
||| || | || |||||| | || ||||| || || || ||| | ||||| ||| | ||
Sbjct 34917 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 34858
Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619
||| || || || ||||||||||| || ||| ||| ||| | || || || ||||||||
Sbjct 34857 GAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGG 34798
Query 61620 CATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCG 61677
|||||| || || | ||| || || ||| | || || | ||| | || |
Sbjct 34797 CATGCACACCGACTTCGCCTGCCTT-CTCTTC--TCTCT-CCTCGAGAACAAGCCCAGCC 34742
Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737
| ||| ||| | | || | ||| || || || || ||||| || |||
Sbjct 34741 CA-GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGC 34683
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
||||| | || | | || |||||||||| | || |||| || || || ||
Sbjct 34682 GACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 34623
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAA 61854
|| || || ||||||||| || | | | || | | || | |||| | | |
Sbjct 34622 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAA---GGTCTACCACGCCACC 34566
Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914
||||| || || |||||||| | ||||| |||| ||| ||||| || || ||||||||
Sbjct 34565 AACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAG 34506
Query 61915 CGTGTAGGCGACTATCA 61931
|| || |||||||| ||
Sbjct 34505 CGCGTCGGCGACTACCA 34489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565349588080
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