Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq88 479 2e-130 seq23 158 1e-33 >seq88 Length=290544 Score = 479 bits (530), Expect = 2e-130 Identities = 1251/1884 (66%), Gaps = 62/1884 (3%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||| || || | | | || ||| |||| | |||||||||||||| ||| Sbjct 178849 TCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATGCCAGTC 178908 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATA-ATTCGGCTC 65196 ||||| ||||| ||| || || ||||| || | | || |||| | | | ||||| Sbjct 178909 TTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAG-TGATCTTGCCCATAGTAGGCTC 178967 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || | ||||||| ||| || ||| || |||||| || || ||||| Sbjct 178968 CTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCAT 179027 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGG--CGACGTA-CCTC 65313 |||||||| | || ||| |||||||||||||||||||| ||| | || |||| Sbjct 179028 CTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTC 179087 Query 65314 AATTGGAATCTCCTCAATGTCCTGG--ACTGAACCACGACGTGCAATAATGCGATTACGC 65371 | || || | ||| ||||| | ||||| | | || || || || || | Sbjct 179088 A---GGGATGTTGGGAAT--CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTC 179142 Query 65372 ATCGACTCTGACCACAAACCCAAATCGATAAGATG-TTGA---ACCAAGTGACGATTGAT 65427 || ||| ||||||| ||||| |||| ||| | |||| |||| | | |||| Sbjct 179143 ATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGG----TTGAC 179198 Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || |||||||| || | || ||||| ||| |||||||||||| ||| || || || Sbjct 179199 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 179258 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 | | || ||||||| ||||| || | ||| || |||||||||||||| || | | || Sbjct 179259 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 179318 Query 65548 TGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCA-ATTCGTCCCAGTTCCACA--T 65604 ||||| || | |||| | |||| || | || | || |||||| ||| | | Sbjct 179319 CGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACG-CCCAGTCCCAGAGGT 179377 Query 65605 CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG---- 65660 | || | || ||||| | |||||||| | || ||| | || |||| Sbjct 179378 CAGTAGGT-GT-GACATTC------CACATATCGTACTGGAGGATACC----CTGGGATA 179425 Query 65661 CCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCT 65720 | || || || | | | | ||| || ||||| || | | || || Sbjct 179426 CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAG 179485 Query 65721 CGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGC 65780 ||| || ||| || ||||||||||| || | || || | || || || Sbjct 179486 TGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTG 179545 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 |||| | || | | | || || | ||||| ||||||||||| || ||||||| Sbjct 179546 ACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGA 179605 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 |||| || || || || ||| || | ||||| |||||||||| |||| |||| Sbjct 179606 TGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGA 179665 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCA 65959 | || ||||| ||||| || || || || || | ||| | || || ||| ||| Sbjct 179666 TGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT-GAAGTCA 179724 Query 65960 AAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCG 66019 || ||| ||| || | | ||||| || ||||||||||| || Sbjct 179725 AAC--------ACGC-CGGCCTTGTAGT---CGACAAAAGAAGGCAGGGCAAGAGAAGCC 179772 Query 66020 AGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTA 66079 | |||||| ||||| | ||| ||||||||||| ||||| ||||| || |||||||| || Sbjct 179773 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 179832 Query 66080 CTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTAC 66139 || ||| ||||| || | |||| || || |||||||| ||||| || |||||||| Sbjct 179833 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 179892 Query 66140 ATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGT 66199 | ||| | || | || ||||| || | ||||| |||||||| |||||| || Sbjct 179893 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 179952 Query 66200 GCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAA 66258 || || || | | |||| | ||| | ||||| ||||| || |||||| Sbjct 179953 GCGCGAACAGT-CTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAA 180011 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 |||||| | || |||| || | || |||| || || |||||||| | ||| | Sbjct 180012 TTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTT 180071 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 || | | || ||||| ||| || || ||||| ||||| || |||||||||||||| Sbjct 180072 GCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATC 180131 Query 66379 GCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 ||| || || |||||| ||||||| || ||||||| ||| ||||| |||||| ||| Sbjct 180132 GCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTC 180191 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 || |||||||| || |||||||||||||| | || ||| ||| |||||| ||||| Sbjct 180192 AGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTC 180251 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 ||| |||||||| |||||| | ||||| | ||| || | ||| || |||||| | || Sbjct 180252 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 180311 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 || ||||| ||||| || || || || || ||| || || || |||||||| Sbjct 180312 GTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 180371 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC---ACTGTCCGGAATATGCCGTCAAT 66675 || || ||||| ||||| ||||| || | | ||| | | |||||||| || Sbjct 180372 GCCAGCGGTCTTGGAGATCAACGCACA---GGTCTTGAGTGTGTCGTAAATGCCGTCGAT 180428 Query 66676 GGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGC 66735 | ||| |||| ||| | |||| ||||||| | ||| ||| |||||| | || Sbjct 180429 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGC 180488 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||| | || || | ||||| || ||||| | |||||||||| | ||| ||||| Sbjct 180489 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 180548 Query 66796 GATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTG 66855 |||| | || |||| ||||| ||||| || | ||| ||||| || | || ||| Sbjct 180549 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 180608 Query 66856 AGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915 || || ||| | | | | || || | | | || || ||||| || ||||||| Sbjct 180609 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAA 180668 Query 66916 ACCAAAGTACGAGTAATTGAAATC 66939 ||||||| || ||| ||||| || Sbjct 180669 ACCAAAGAACTGGTAGTTGAAGTC 180692 >seq23 Length=86929 Score = 158 bits (174), Expect = 1e-33 Identities = 561/857 (65%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| || ||||| |||||||| | |||||| |||| | ||| Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271 Query 61150 AAAGACATGAATGACTGGGA---GCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 || ||| | | |||||| | |||| | | ||| | || | ||||| || Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGAT-GACGAGCGCTTCTTCATCTCCCA 35212 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| || || || || || || ||||| ||||| | | || || || Sbjct 35211 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 35152 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | || || ||| | | ||||| || || |||||||| ||||| || ||||| Sbjct 35151 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 35092 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 ||| || ||||| |||| ||| | | |||||||| || ||||| || |||| | | Sbjct 35091 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 35032 Query 61386 ACGT--GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG---GAAAGCG 61440 || | || | ||||| |||||||| | || || | | | || ||| || Sbjct 35031 GCGCAGGTACC--TCTTCAACGCCATCGACAACATCCC--CTGC-ATCCGCAAGAAGGCC 34977 Query 61441 GATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 || |||||| | |||||| || | | ||| | ||||| | | || | | || Sbjct 34976 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC-ACATTCGCCAACCGCCTCGTTGC 34918 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||| || | || |||||| | || ||||| || || || ||| | ||||| ||| | || Sbjct 34917 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 34858 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 34857 GAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGG 34798 Query 61620 CATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCG 61677 |||||| || || | ||| || || ||| | || || | ||| | || | Sbjct 34797 CATGCACACCGACTTCGCCTGCCTT-CTCTTC--TCTCT-CCTCGAGAACAAGCCCAGCC 34742 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 | ||| ||| | | || | ||| || || || || ||||| || ||| Sbjct 34741 CA-GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGC 34683 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||||| | || | | || |||||||||| | || |||| || || || || Sbjct 34682 GACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 34623 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAA 61854 || || || ||||||||| || | | | || | | || | |||| | | | Sbjct 34622 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAA---GGTCTACCACGCCACC 34566 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || |||||||| | ||||| |||| ||| ||||| || || |||||||| Sbjct 34565 AACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAG 34506 Query 61915 CGTGTAGGCGACTATCA 61931 || || |||||||| || Sbjct 34505 CGCGTCGGCGACTACCA 34489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565349588080