Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20consortialis_20[genbank_20GCA_5F001950455.1_202016-12- 09] 23 sequences; 34,240,857 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq8 302 7e-80 seq20 235 9e-60 seq6 98.7 2e-18 >seq8 Length=2530157 Score = 302 bits (334), Expect = 7e-80 Identities = 237/279 (85%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 118833 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 118776 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 118775 GCCGCGAAGCTACCAYCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 118716 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 118715 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 118660 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||||||||| || ||||| |||| ||||| | || |||| ||||| Sbjct 118659 CCTTACCAGGCCGGCGTTGGCAGTCCCATTGAAG-TTGGGGCTGTTCGCCGGCGTATTGC 118601 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||| ||||||||||||| Sbjct 118600 AATTCTACAGTGCGCAGGATTGAATYCTTTGCAGACGAC 118562 >seq20 Length=7796 Score = 235 bits (260), Expect = 9e-60 Identities = 225/279 (81%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| ||||||||||||||||||||| |||| |||||| Sbjct 5301 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 5358 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5359 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 5418 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| ||||| | | || |||| | ||| |||| | |||||||||||||| | Sbjct 5419 GAACGCGGTGA-TAGCACCCGCACGT-ATAGACGGACAAGAATAGGCTTCGGCTTAGTGT 5476 Query 181 CTTAGCAGGC-CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 || ||||||| | | | |||| |||||| | ||| | | | ||| |||| Sbjct 5477 CTCAGCAGGCGATTCCTCCGTGGTCC--TCGAAGCGGGCCGCGGT-ATTTCGCGTATTGT 5533 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| || | || ||| ||||||||||||||||||| Sbjct 5534 AATTTCAACACGAGCGGGGTTAAATCCTTTGCAGACGAC 5572 >seq6 Length=2769894 Score = 98.7 bits (108), Expect = 2e-18 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 123 ACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGC-TTCGGCCCCGAACC 181 ||| ||||||| | ||||||| |||||||||||||||||| || ||||| ||||| Sbjct 2701936 ACGCGGTGATTTCCGCCTGCACC----AGTCGGATACGAATAGGCCTTTGGCCCAGAACC 2701881 Query 182 TTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCAA 241 ||| ||| |||| || | | | ||| | ||| | || |||| | | ||||||| Sbjct 2701880 TTACCAGATCGGCGTTGGTGGCCTCATTGAAACTTGGGTCACTAAGCTAGTGTATTGCAA 2701821 Query 242 TTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || || |||||||| ||||||||||||||||||| Sbjct 2701820 TTGTACAGTGCGCAGGATTAAATCCTTTGCAGACGAC 2701784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199817472