Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1348 316 7e-84 seq322 280 5e-73 seq732 262 1e-67 >seq1348 Length=33369 Score = 316 bits (350), Expect = 7e-84 Identities = 406/550 (74%), Gaps = 21/550 (4%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | |||||||| | | |||||| Sbjct 12746 CGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGC 12687 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| ||| | | || || || || |||||||| |||||| ||||||||||| Sbjct 12686 TCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCT 12628 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT-CAAC 229 || | ||||||| || ||||||||||||||||||||| |||||| || |||||| |||| Sbjct 12627 ATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCT-AGTTTTGCAAC 12569 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 ||| ||||||| |||||| | |||| ||||| |||| |||||||||||| Sbjct 12568 ACTAGTCGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGAT 12509 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA 349 ||||| | ||||||||| | | || ||| || ||||||||||||||||| |||| ||| Sbjct 12508 CACTTGGTTTCGGGTCTACACCCAGCGACTGAT-CGCCCTATTCGGACTCGATTTCTCTA 12450 Query 350 CGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 ||||| ||| | | ||||||||| || || || | || |||| | | |||| | ||| Sbjct 12449 CGGCTTCCCTATTC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATTATACAA 12392 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 |||| |||| ||||| ||| || ||||| || ||||| ||| Sbjct 12391 AAGGTACGCAGTCAC------CCT----TGC----GGGCTCCTACTTTTTGTAAGCATGC 12346 Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||||||| Sbjct 12345 GGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 12286 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 || | ||||||||| | |||||||||| ||| || ||||||| ||| |||| | Sbjct 12285 AGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTTCAGA 12226 Query 590 CGAAATTTCA 599 | |||||| Sbjct 12225 CAGGATTTCA 12216 >seq322 Length=1727 Score = 280 bits (310), Expect = 5e-73 Identities = 424/591 (72%), Gaps = 19/591 (3%) Strand=Plus/Plus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||| ||||| |||| | ||||| |||| | ||| | | ||||| | || ||||||| Sbjct 984 GACGACGGACCTTAG-CACCCGCCGTCTGTCTCCCG-GATATCACTCCTAGGTATTCGGA 1041 Query 63 GTTTGGTT-GATTTCGGTA-AGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCG 120 |||||||| || || |||| | || | | |||| | ||||||||||||||||| || Sbjct 1042 GTTTGGTTAGAGTT-GGTAGATCTCGCGACCCCCGCAT-CCATCCAGTGCTCTACCCCCT 1099 Query 121 GGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGT 180 | || ||| || |||| ||| ||||| |||||||||||||| | | Sbjct 1100 AGGGTGTCCATCCGAGGCACTACCTCAATAGTTTTCGCGGAGAACCAGCTATTTCCCGGC 1159 Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||||||||||||||||||||| |||| |||||| | | |||||||| | | | |||| Sbjct 1160 TTGATTGGCCTTTCACCCCTAAACACAACTCATCCGGTAACTTTTCAACGTTAATCGGTT 1219 Query 241 CGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 ||| |||||| || ||||| ||||| |||| |||| |||||| | | ||| Sbjct 1220 CGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGTCATGCCTAGATCGCCGGGTTTC 1279 Query 301 GGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA 360 |||||| | | ||| |||||||||| |||||||||||||| || |||| || Sbjct 1280 GGGTCTAATACTTCAAACTATGTCGCCCTATTCAGACTCGCTTTCGCTGCGCCTACACCT 1339 Query 361 CACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCG 420 ||| |||| || || | ||| || || ||| | |||| | ||| ||| |||| | Sbjct 1340 ACCGGCTTAAGCTTGCTTGA-AACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTG 1398 Query 421 TCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTA 480 ||| || ||| || | | |||| || | ||||||||| |||||||||| Sbjct 1399 TCA---GG--CCTCAAGGAC------CCTCCAACTGCTTGTAGGCAATCCGTTTCAGGTA 1447 Query 481 CTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 || ||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| Sbjct 1448 CTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTAT 1507 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||| | |||||||||||||| |||||||||| ||| |||| || Sbjct 1508 CGGTCATGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 1558 >seq732 Length=604 Score = 262 bits (290), Expect = 1e-67 Identities = 196/226 (87%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 |||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 536 TCGCAACACACCGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCAGTCACGAGGATCC 477 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 || | | | | ||||| |||| ||||||||||| ||||||||||||||||||||||| Sbjct 476 GAAGATCC-CGAC-GCTCCCACGGCTTGTAGGCACACGGTTTCAGGTACTATTTCACTCC 419 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552 | || | ||||||||||||| |||||||||||||| | ||||||||||||||||| ||| Sbjct 418 GCTCCCGCGGTACTTTTCACCATTCCCTCACGGTAC-TATCCGCTATCGGTCACCAGGGA 360 Query 553 GTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 |||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 359 ATATTTAGGCTTAGCGGGTGGTCCCGCCAGATTCACACGGGATTTC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817536729344