Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1348 405 1e-110 seq322 289 7e-76 seq732 149 2e-33 >seq1348 Length=33369 Score = 405 bits (448), Expect = 1e-110 Identities = 347/415 (84%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 12600 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 12543 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 12542 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 12488 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| ||||||| | |||||| ||| | ||||| || |||||||||||||| Sbjct 12487 CCAGCGACTGATCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAAC 12429 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12428 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCTT--- 12373 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 12372 -GCGGGCTCCTACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 12315 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 12314 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATTACGAGTATTTAG 12255 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 12254 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 12200 >seq322 Length=1727 Score = 289 bits (320), Expect = 7e-76 Identities = 325/416 (78%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| ||| |||||||| ||||| || ||||||||| |||||||| || |||| Sbjct 1183 CACAACTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCGT-GTTA 1239 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGC 128 || ||||| || |||| ||| | ||||||||| ||||| |||||||| | | || Sbjct 1240 CCGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGTTT-CGGGTCTAATACTTCAA- 1295 Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 |||| | ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 1296 -ACTATGTCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTACCGGCTTAAGCTT 1353 Query 187 TGCCACTGAAAA--TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || ||||| |||||| | |||||||||| ||| |||||||| |||| | ||| Sbjct 1354 -GCT--TGAAACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTGTCAGGCCTCAAG 1410 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||| |||||||||| ||| | |||||||| || ||||||||||||| |||| Sbjct 1411 GACC-CTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGG 1469 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||||||||||||||||| |||||||||| | ||||||||| Sbjct 1470 GTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATGTACGAGTATTTAGG 1529 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| || | |||| ||| |||||||| Sbjct 1530 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTACACGTGTCCCGCCCTACTCG 1585 >seq732 Length=604 Score = 149 bits (164), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 200 AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-------CCAACAAAGTGG-GCT 251 || |||| | | |||| | ||||||| |||||||||| | || | | ||| Sbjct 521 AACTCGCAGGCTCATTCTTCAAAAGGCACGCAGTCACGAGGATCCGAAGATCCCGACGCT 462 Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 ||||| ||||||| ||| ||||||||||| |||||||||||| ||| ||| ||| |||| Sbjct 461 CCCACGGCTTGTAGGCACACGGTTTCAGGTACTATTTCACTCCGCTC-CCGCGGTACTTT 403 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 || || |||||||||||||||| | | |||||||||| | | ||||||| ||| | | Sbjct 402 TCACCATTCCCTCACGGTACTA-TCCGCTATCGGTCACCAGGGAATATTTAGGCTTAGCG 344 Query 372 GATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 | ||||||| ||| ||||| || ||||||| || |||| ||||| Sbjct 343 GGTGGTCCCGCCAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241556779904