Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq322 203 8e-50 seq1348 167 5e-39 >seq322 Length=1727 Score = 203 bits (224), Expect = 8e-50 Identities = 294/412 (71%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| ||||||| | || || | | | | Sbjct 574 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 633 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| | ||| || ||||| | | ||||||||||| || Sbjct 634 CAGGAACCCTTGGTCTTTCGGCGAAAGGGCATCTCACCCTTTTTATCGCTACTCATGTCT 693 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||| |||| | | ||||||||| || | ||| | ||||| | || || Sbjct 694 GCATTCGCACTTCCGATACCTCCACCACCCATT-ACCAGATGGCTTCGCAGGCTTACGGA 752 Query 179 ACGCTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||||||| ||||| ||| ||||| || |||||||| | | ||| Sbjct 753 ACGCTCCGCTACCGCGTGTAGTAAACTACACAC----CCTAAGCTTCGGTGCACGTCTTG 808 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTC 284 ||||||| ||||| ||| ||| | | | |||| ||||||||||| |||||| || Sbjct 809 AGCCCCGTTACATCTTCGCCGCAGGAACCCTTGTTTAGACCAGTGAGCTGTTACGCTTTC 868 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344 ||| ||||||||||||||| ||||||||||||||||||| | | | |||||| |||| Sbjct 869 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATGCTTT 928 Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||||| || | |||| ||| ||||||||| | || ||||||||||||| Sbjct 929 CCCACTTAGACGTGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 980 >seq1348 Length=33369 Score = 167 bits (184), Expect = 5e-39 Identities = 289/407 (71%), Gaps = 20/407 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 13194 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 13135 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| |||| || |||||| | |||||||||||||| || Sbjct 13134 AAAACCTTGCGCTTA-CGGCGAGCGGGCTTTTCACCCGCTTTAACGCTACTCATGCCAGC 13076 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | || | | || |||||| || ||| | Sbjct 13075 ATTCGCACTTCTGAT-ACCTCCAGCATCCC-TCTCGAGACACCTTCACAGGCTTACAGAA 13018 Query 180 CGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACT---TAAG 231 ||||| |||||| | ||| || || ||||||||| ||||| | || Sbjct 13017 CGCTCTCCTACCACTTGCACTTGCGTGCAAATCCGCAGCTTCGG----TAACTGGCTTAG 12962 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 12961 CCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAT 12902 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 12901 GATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTT 12842 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 12841 AGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 12796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177559007744