Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq44 78.8 3e-12 >seq44 Length=600 Score = 78.8 bits (86), Expect = 3e-12 Identities = 149/212 (70%), Gaps = 18/212 (8%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATACC 81 || |||| ||||||| |||||||||||| || ||||||| | |||| ||||| Sbjct 405 AGTGGCGCACGGGTGCGTAACGCGTGGG-AATCTGCCCT-TGGGTTCGGAATAACAGTTA 462 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| | ||||||||| ||| || || || | || ||| |||| || || Sbjct 463 GAAATGACTGCTAATACCGGATGATG-ACGTTAAGTCCAA---AGATTTATC---GC-CC 514 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 | ||||| ||||||| ||||||||||||||| ||||| || ||||||| Sbjct 515 G-------AGGATGAGCCCGCGTAGGATTAGCTAGTTGGTGTGGTAAGAGCGCACCAAGG 567 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| |||| | |||||||| ||||| Sbjct 568 CGACGATCCTTAGCTGGTCTGAGAGGATGATC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497547868544