Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3224 150 1e-31 seq2399 141 7e-29 >seq3224 Length=193136 Score = 150 bits (166), Expect = 1e-31 Identities = 236/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||| | || | ||| ||||| | ||| || || || ||| || | ||| || || Sbjct 110196 GGACAGAACAATGTCCATTCACCGTTCTGCTCAACCCGTTTCATGAACAAATCGGGAGTC 110137 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || || ||| ||||| || |||| ||||| | ||||| || || || | Sbjct 110136 CAAAGAGCAAGGAAAAGATCACGGGCTCTCACTTCCTCCTTTCCGTGGTTCTTACGAAGA 110077 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || || ||||| || || |||| ||||| ||||| || ||||||||||| | || Sbjct 110076 TCCAGAAACTCGAAAATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTGGC 110017 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || ||||||||| |||||||| |||||| ||||| |||||||| | ||| || Sbjct 110016 CGCTTATTGCCACCTTGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAGGA 109957 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 |||| ||| || || |||||| || || | ||| ||| || || || ||| Sbjct 109956 ACGATCCCATTGGAGGAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATACGA 109897 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||||||| |||||||||||||| || || || || || Sbjct 109896 TGAACATTAAGACCAATACCACCAGCTGTTTTGGAAAT 109859 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 |||| | |||||| ||||| |||||||| ||||| | || || || ||||||||||||| Sbjct 110550 TGGGCAAGGCAAGGGATGCTAGGTTGCAAACAGCAACTTCATCTGGTGCGGTATACTCGA 110491 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 || || || |||| ||| || || || || || | ||| | || || ||||| | Sbjct 110490 TGATCTCCGTACACAAGTTAGAGCTTCGAATCGTTCCGAGATTTTTCTGGTTGCTCTTTC 110431 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 |||||||||| |||||||| | |||| | ||| | |||||||| || | || | || Sbjct 110430 GATTGCATGCGTCCTTGTAAAGCATGAAAGGATTTCCGGTCTCGGTCTGAGCTTCCAGGA 110371 Query 66180 TGGCGTGCCAAAG 66192 |||||| ||| || Sbjct 110370 TGGCGTACCAGAG 110358 >seq2399 Length=446898 Score = 141 bits (156), Expect = 7e-29 Identities = 215/303 (71%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 61080 TGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| | ||||||| |||||||| ||||| ||||| ||||||||||| | || ||| | Sbjct 272142 TGAGTAGATTTGGCAAATGTACAAGAAGGCCGAAGCATCCTTCTGGACTGCTGAAGAGAT 272083 Query 61140 CGATTTGTCCAAAGACATGAATGACTGG---GAGCG-TTTATCGAGCGGTGAACAACATT 61195 ||| |||||||| || | | |||||| |||| | | ||| | ||||| | | Sbjct 272082 CGACTTGTCCAAGGATCTCCACGACTGGAATCAGCGACTCAACGA-TGATGAACGCTACT 272024 Query 61196 TCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTAT 61255 |||| ||| || ||||| ||||| ||||| || || || ||||| ||||| || | Sbjct 272023 TCATCTCACACGTCTTGGCCTTCTTCGCCGCCTCCGATGGAATCGTGAATGAAAACCTTG 271964 Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 | || || ||| ||| | || | | || || ||||| |||||||| ||||||| Sbjct 271963 TCGAGCGCTTCAGTGGTGAGATCCAGATCCCAGAAGCCCGTTGCTTCTACGGGTTCCAGA 271904 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || |||||||| ||||||| |||| ||| | | |||||||| || || |||| | Sbjct 271903 TTATGATGGAGAACATCCACTCTGAGACCTACTCTCTCCTCATCGACACATATATCAAAG 271844 Query 61376 AGC 61378 ||| Sbjct 271843 AGC 271841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551133301840