Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq3355 136 6e-27 seq372 114 2e-20 >seq3355 Length=30814 Score = 136 bits (150), Expect = 6e-27 Identities = 218/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || |||||||| ||||| ||||| || || ||||| || || ||||||||||||| Sbjct 8733 TGTCGTGCCAGCTGTACCAGCGCAGTGCCGACATCTTCCTGGGCGTGCCGTTCAACATCG 8674 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGT 196898 | ||||| | || | |||||| | ||||| ||| || ||| ||||| | Sbjct 8673 CCAGCTACGCGCTACTCACGCACATGATCGCGCAGCAGTGCGACCTGGCGGTCGGCGACT 8614 Query 196899 TCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAAC 196958 || | ||||| ||||| ||| |||||||||| ||| ||| || ||||| ||| | Sbjct 8613 TCATCTGGACCGGCGGCGACTGCCACATCTACAGCAACCACCACGAGCAGGTGGAACTGC 8554 Query 196959 AGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTA 197018 |||| || || | || | | | || ||||| ||||| ||||| |||| | Sbjct 8553 AGCTCTCCCGCCAGCCCCATCCCTACCCCGTGCTGGACATCAAGCGCAAGCCGGCGTCGA 8494 Query 197019 TCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTA 197078 ||||||| ||| | ||| |||||||| | | | |||| | | ||||||||||| | Sbjct 8493 TCTTCGACTACCGGTACGAGGACTTCGAGGTCCTGGACTACCAGCACCATCCGGCGATCA 8434 Query 197079 AAGCCCCGGTGGC 197091 | || || ||||| Sbjct 8433 AGGCGCCCGTGGC 8421 Score = 125 bits (138), Expect = 1e-23 Identities = 182/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 196112 CACGACAAAG-CTGACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGC 196169 |||| | ||| | ||||| ||||| || ||||| | | | | ||||| ||||||| Sbjct 9164 CACGCCCAAGACCGACCGCACCGGTACCGGCACGCGCAGCGTGT-TCGGCTACCAGATGC 9106 Query 196170 GCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCA 196229 | ||||| ||| | || || ||||||||||| ||||| ||||| |||| ||| |||| Sbjct 9105 GGTTCGACCTGAACGATGGCTTCCCGCTGGTGACCACCAAGAAGGTCCACCTGAAATCCA 9046 Query 196230 TCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACA 196289 |||| || || |||||||||||||| | || | | ||| ||| | ||| || Sbjct 9045 TCATCCACGAGCTGCTGTGGTTCCTGGAGGGCTCGAGCGACAACAACAAGCTGCGCGAGC 8986 Query 196290 ACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACG 196349 ||| || | |||||| |||| |||||| ||| ||| ||||||||||||| |||| Sbjct 8985 GCGGCGTGACCATCTGGGACGAATGGGCGCGCGAGGACGGCGACCTGGGGCCGGTGTACG 8926 Query 196350 GTAAGCAGTGGCG 196362 | ||||||||| Sbjct 8925 GCGTGCAGTGGCG 8913 >seq372 Length=11520 Score = 114 bits (126), Expect = 2e-20 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| ||||| | | | | ||||| |||||||| ||||||||| Sbjct 9524 GACCGCACCGGCACGGGCACGCTCAGCGTCT-TCGGCCACCAGATGCGGTTCGATCTGGC 9582 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || |||||| || ||||||| |||||||| || ||||| || ||||| || | Sbjct 9583 CGAGGGCTTCCCGGTGCTCACCACCAAGAAACTGCACCTGCGCTCGATCATCGTCGAGTT 9642 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| ||| ||||||||| | | ||| | || | ||| || Sbjct 9643 GCTGTGGTTCCTGCGCGGCGACACCAACGTGCGCTGGCTGCAGGATCGCAAGGTCAGCAT 9702 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| |||||| | || ||| | || || ||||| || || ||||| ||||| Sbjct 9703 CTGGGACGAATGGGCGGATGAGGCGGGTGATCTCGGCCCGGTGTATGGCAAGCAATGGCG 9762 Query 196363 TGAATGG 196369 || ||| Sbjct 9763 CGACTGG 9769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771508828261320