Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 2e-12 seq23 84.2 8e-11 >seq5 Length=479718 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 364425 CAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCCGT 364484 |||| ||||| || || ||||| | | | |||||||||||||||||||| | || | Sbjct 127055 CAATTGTCATTCGCGACGGAATAGCGTGTGGGTTGATGATGATGTCAGGTGTGACACCTT 127114 Query 364485 CAGCGGTAAAGGGCATATCTTCGGGA-GGAACGATGAGACCAATGGTTCCCTTTTGCGCA 364543 | || || |||||||| || | || | | ||| ||||||||| |||||||| || Sbjct 127115 CTCGAGTGAACGGCATATCCTCTTGTCGGTAAG-TGACACCAATGGTACCCTTTTGTCCA 127173 Query 364544 TAGCGAGAAGCAAACTTGTCGCCAAT 364569 | |||||||||||||| || ||||| Sbjct 127174 TGACGAGAAGCAAACTTATCACCAAT 127199 >seq23 Length=269906 Score = 84.2 bits (92), Expect = 8e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 364418 AGCTTACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACC 364477 ||||| || | ||||| || || || | | | ||||||| ||||||||||| || | Sbjct 57829 AGCTTGCCGACTGTCATTCGGGACGGGAAGCCGTGAGGGTTCATGATGATGTCGGGACAC 57888 Query 364478 ATGCCGTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTT 364537 | ||||| ||| || ||||| ||||| || ||||||| ||||| | || ||| Sbjct 57889 AGGCCGTTGTCGGCGAATGGCATGTCTTCCTGATCGACGATGATACCAACGACACCTTTT 57948 Query 364538 TGCGCATAGCGAGAAGCAAACTTGTCGCCAA 364568 ||| ||| |||||| | |||||||| |||| Sbjct 57949 TGCCCATGGCGAGAGGAGAACTTGTCCCCAA 57979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884869784726384