Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2458 293 4e-77 seq2540 257 3e-66 seq174 235 1e-59 seq62 136 7e-30 >seq2458 Length=219 Score = 293 bits (324), Expect = 4e-77 Identities = 188/204 (92%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||| ||||||| |||||| Sbjct 204 TGGTCCGGCCGGGCCTTTCCCTCTGTGGACCCCCATGCCCTTCACGGGGTGTGGCGGGGA 145 Query 65 GCCAGGACTTTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123 |||||||||||||||||||||| |||||||| || | |||||||| |||||||||||| Sbjct 144 AACAGGACTTTTACTTTGAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 85 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 TTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 25 Query 184 TAATGATTAATAGGGATAGTCGGG 207 |||||||||||||||| ||||||| Sbjct 24 TAATGATTAATAGGGACAGTCGGG 1 >seq2540 Length=208 Score = 257 bits (284), Expect = 3e-66 Identities = 185/210 (88%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 26 TCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAA 85 |||| ||| || |||||||||||||||||||| ||||| | ||||||||| ||||| || Sbjct 2 TCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGG-GAAAGGACTTTTTCTTTGTAA 60 Query 86 AAATTAGAGTGT-TCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATA 144 || ||||||| || |||||||| ||||||||||||||||||||||||||| |||| Sbjct 61 AA--TAGAGTGGCTCCCGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATA 118 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 119 GGACGTGCGGGTCTATTTTGTTGGTTTCTAGGACCGCCGGAATGATTAATAGGGACAGTC 178 Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 ||||| |||| |||||||||||||||||| Sbjct 179 GGGGGGCTCAGGATTCAATTGTCAGAGGTG 208 >seq174 Length=7792 Score = 235 bits (260), Expect = 1e-59 Identities = 143/150 (95%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 169 TTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228 ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 6292 TTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCA 6233 Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 6232 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGT 6173 Query 289 TTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||| |||||||||||||||| Sbjct 6172 TTTCATTAATCAG-GAACGAAAGTTAGGGG 6144 Score = 127 bits (140), Expect = 4e-27 Identities = 81/88 (92%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 6494 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 6435 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAG 92 |||||||||||||||||||||||||| Sbjct 6434 AACAGGACTTTTACTTTGAAAAAATTAG 6407 >seq62 Length=150910 Score = 136 bits (150), Expect = 7e-30 Identities = 87/95 (92%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 89644 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 89585 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 |||||||||||||||||||||||||||||| || Sbjct 89584 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTC 89550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915175930240