Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2458 293 4e-77
seq2540 257 3e-66
seq174 235 1e-59
seq62 136 7e-30
>seq2458
Length=219
Score = 293 bits (324), Expect = 4e-77
Identities = 188/204 (92%), Gaps = 1/204 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||| ||||||| ||||||
Sbjct 204 TGGTCCGGCCGGGCCTTTCCCTCTGTGGACCCCCATGCCCTTCACGGGGTGTGGCGGGGA 145
Query 65 GCCAGGACTTTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123
|||||||||||||||||||||| |||||||| || | |||||||| ||||||||||||
Sbjct 144 AACAGGACTTTTACTTTGAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACA 85
Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 25
Query 184 TAATGATTAATAGGGATAGTCGGG 207
|||||||||||||||| |||||||
Sbjct 24 TAATGATTAATAGGGACAGTCGGG 1
>seq2540
Length=208
Score = 257 bits (284), Expect = 3e-66
Identities = 185/210 (88%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 26 TCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAA 85
|||| ||| || |||||||||||||||||||| ||||| | ||||||||| ||||| ||
Sbjct 2 TCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGG-GAAAGGACTTTTTCTTTGTAA 60
Query 86 AAATTAGAGTGT-TCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATA 144
|| ||||||| || |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 61 AA--TAGAGTGGCTCCCGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATA 118
Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 119 GGACGTGCGGGTCTATTTTGTTGGTTTCTAGGACCGCCGGAATGATTAATAGGGACAGTC 178
Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTG 234
||||| |||| ||||||||||||||||||
Sbjct 179 GGGGGGCTCAGGATTCAATTGTCAGAGGTG 208
>seq174
Length=7792
Score = 235 bits (260), Expect = 1e-59
Identities = 143/150 (95%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 169 TTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA 228
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 6292 TTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCA 6233
Query 229 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 6232 GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGT 6173
Query 289 TTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||||||| ||||||||||||||||
Sbjct 6172 TTTCATTAATCAG-GAACGAAAGTTAGGGG 6144
Score = 127 bits (140), Expect = 4e-27
Identities = 81/88 (92%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 6494 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 6435
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAG 92
||||||||||||||||||||||||||
Sbjct 6434 AACAGGACTTTTACTTTGAAAAAATTAG 6407
>seq62
Length=150910
Score = 136 bits (150), Expect = 7e-30
Identities = 87/95 (92%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 89644 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 89585
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
|||||||||||||||||||||||||||||| ||
Sbjct 89584 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTC 89550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915175930240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |