Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2458 192 6e-47 seq2540 183 3e-44 seq174 116 4e-24 >seq2458 Length=219 Score = 192 bits (212), Expect = 6e-47 Identities = 133/148 (90%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAA-TTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT 59 |||| |||||||||||||||||||||| |||||| | || | |||||||| ||||||||| Sbjct 147 GGAAACAGGACTTTTACTTTGAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAAT 88 Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 87 ACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 28 Query 120 CCCGTAATGATAAATACGGATAGTCGGG 147 |||||||||| |||| ||| ||||||| Sbjct 27 -CCGTAATGATTAATAGGGACAGTCGGG 1 >seq2540 Length=208 Score = 183 bits (202), Expect = 3e-44 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGT-TCAAAGCAGGCCTTTGCTCGAATACATTA 65 ||||||||| ||||| |||| ||||| | || |||||||| ||||||||||||||| Sbjct 43 AGGACTTTTTCTTTGTAAAA--TAGAGTGGCTCCCGGCAGGCCTATGCTCGAATACATTA 100 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||| | Sbjct 101 GCATGGAATAATGAAATAGGACGTGCGGGTCTATTTTGTTGGTTTCTAGGACCG-CCGGA 159 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTG 174 ||||| |||| ||| ||||||||| |||| |||||||||||| ||||| Sbjct 160 ATGATTAATAGGGACAGTCGGGGGGCTCAGGATTCAATTGTCAGAGGTG 208 >seq174 Length=7792 Score = 116 bits (128), Expect = 4e-24 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167 |||||||||||||| |||||||| |||| ||| ||||||||| |||||||||||||||| Sbjct 6292 TTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTC 6234 Query 168 AAAGGTGAAATTCTTGGATTTATT 191 | |||||||||||||||||||||| Sbjct 6233 AGAGGTGAAATTCTTGGATTTATT 6210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511986955200