Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq2458 192 6e-47
seq2540 183 3e-44
seq174 116 4e-24
>seq2458
Length=219
Score = 192 bits (212), Expect = 6e-47
Identities = 133/148 (90%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAA-TTAGAGCGTTCAAAGCAGGCCTTTGCTCGAAT 59
|||| |||||||||||||||||||||| |||||| | || | |||||||| |||||||||
Sbjct 147 GGAAACAGGACTTTTACTTTGAAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAAT 88
Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 87 ACATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 28
Query 120 CCCGTAATGATAAATACGGATAGTCGGG 147
|||||||||| |||| ||| |||||||
Sbjct 27 -CCGTAATGATTAATAGGGACAGTCGGG 1
>seq2540
Length=208
Score = 183 bits (202), Expect = 3e-44
Identities = 144/169 (85%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGT-TCAAAGCAGGCCTTTGCTCGAATACATTA 65
||||||||| ||||| |||| ||||| | || |||||||| |||||||||||||||
Sbjct 43 AGGACTTTTTCTTTGTAAAA--TAGAGTGGCTCCCGGCAGGCCTATGCTCGAATACATTA 100
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||| |
Sbjct 101 GCATGGAATAATGAAATAGGACGTGCGGGTCTATTTTGTTGGTTTCTAGGACCG-CCGGA 159
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTG 174
||||| |||| ||| ||||||||| |||| |||||||||||| |||||
Sbjct 160 ATGATTAATAGGGACAGTCGGGGGGCTCAGGATTCAATTGTCAGAGGTG 208
>seq174
Length=7792
Score = 116 bits (128), Expect = 4e-24
Identities = 77/84 (92%), Gaps = 1/84 (1%)
Strand=Plus/Minus
Query 108 TTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC 167
|||||||||||||| |||||||| |||| ||| ||||||||| ||||||||||||||||
Sbjct 6292 TTTCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTC 6234
Query 168 AAAGGTGAAATTCTTGGATTTATT 191
| ||||||||||||||||||||||
Sbjct 6233 AGAGGTGAAATTCTTGGATTTATT 6210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511986955200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |