Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5 251 6e-62
seq96 167 2e-36
>seq5
Length=693879
Score = 251 bits (278), Expect = 6e-62
Identities = 637/960 (66%), Gaps = 8/960 (1%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|| || || ||||| || | |||||| ||||| | ||| ||||| || | |||||||||
Sbjct 203224 GGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACA 203283
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| ||||| || || || ||| || || ||||| |||| || || ||||| |
Sbjct 203284 ATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTG 203343
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||||| ||||||||||| | |||| | ||| | || ||||| |||| ||| | ||||
Sbjct 203344 TTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATG 203403
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240
| || ||| || | || | || || || |||| || | || || || |
Sbjct 203404 GAGTACCAGAGCTTCTGGGCACGAATGGT-CGCACGACCCTTGCCCTCACGCTCATACTT 203462
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
||| ||||| || || || || | || | ||| | || || | || ||
Sbjct 203463 TTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGG 203522
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
|||||||| | ||||||||| | || || || || ||| || ||||| || |||||
Sbjct 203523 GCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCA 203582
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
|| || ||| | ||| || || || || || |||||||||| || ||||| ||
Sbjct 203583 AAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATC 203642
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
||||||||||| | ||||| ||||| || |||| ||| ||||| || | ||| ||
Sbjct 203643 AAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCG 203702
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
||| |||||| |||||||| || | || |||||||| ||||| | ||| || |
Sbjct 203703 CTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAAT 203762
Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600
|| || || || | || ||||||||| | ||| ||| || || || || |||
Sbjct 203763 GACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTG 203822
Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTC 66658
||||||| || |||||||| ||| |||| ||||| || || || | ||||
Sbjct 203823 GACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTC 203882
Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718
| ||||| || ||| ||| |||| ||| | |||| |||| || || ||
Sbjct 203883 --ATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGA 203940
Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778
|| |||||| | || ||| || ||||||| ||||| || ||| | || |||
Sbjct 203941 CATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGAC 204000
Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACA 66837
||| || ||| || || | ||| ||||| || || || ||||||| || |||
Sbjct 204001 ATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACA 204060
Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGA 66897
||||| | | || || || || ||||| | | | |||| | | | || ||
Sbjct 204061 -CGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 204119
Query 66898 GCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957
|| |||| ||||||| ||||||||| || |||||||| | ||| || |||||
Sbjct 204120 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 204179
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482
|||| || ||||| || || | ||| ||||| || || |||||||||||| ||
Sbjct 202663 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGC 202722
Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542
|| ||| | ||| |||| |||||||| || | ||||| || || |||||||| |||| |
Sbjct 202723 TCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 202782
Query 65543 AACAATGAGTTTCGCAATCC 65562
| || |||||| || | |||
Sbjct 202783 AGCAGTGAGTTGCGAATTCC 202802
>seq96
Length=87723
Score = 167 bits (184), Expect = 2e-36
Identities = 243/335 (73%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||||||||| || ||||| |||||||||| || ||| ||||| ||
Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824
Query 61147 TCCAAAGACATGAATGACTGG---GAGCGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202
|| ||||| || | |||||| | ||| | | || || ||| || |||||||
Sbjct 52823 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGA-CGATGAGAAATATTTCATCTC 52765
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | |||| |||||||| || || ||||| || ||||| ||||| || | || ||
Sbjct 52764 CCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCG 52705
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| || || ||||| | ||||| ||||| || ||||| |||||||| |
Sbjct 52704 CTTCAGCG-GCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 52646
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||||||| |||||||||| | ||| | | | ||||| || ||||||| ||||| |
Sbjct 52645 TGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGAGCATG 52586
Query 61382 CGGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415
| |||| ||| | | |||||||| ||||||||
Sbjct 52585 CTCAACG-CAACTACCTCTTCAATGCTATCGAGAC 52552
Score = 125 bits (138), Expect = 6e-24
Identities = 333/503 (66%), Gaps = 13/503 (3%)
Strand=Plus/Minus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGA 61491
||| || |||||||| || |||||| ||| |||| | | || || | | ||
Sbjct 52476 GAAGGCAGATTGGGCTATCCGTTGGATT--CAGGACAAAGAATCCAGCTTCGCCCAGCGC 52419
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
||| | || ||||| | || || ||| | || ||||| || | ||||| | |||||
Sbjct 52418 TTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTC 52359
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611
||| ||||||| ||||| | ||||||||||| |||||| ||| || || || || ||
Sbjct 52358 TGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGT 52299
Query 61612 GACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGT 61671
|| ||||| |||| || ||||| ||||| || || || |||| |
Sbjct 52298 GATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGC----ACTCTCACT--TGAAGCAC 52245
Query 61672 CC-GTCGG--AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728
| | | | || || | ||||| || || || || || ||||| | ||
Sbjct 52244 CGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAG 52185
Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788
||||||||||| |||||||| | || | ||||||||| | | ||| |||
Sbjct 52184 TTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAACAG 52125
Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAAT 61848
|| ||||| ||||| ||||| || ||| | || | | | |||| || | | || ||
Sbjct 52124 TACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTACAAG 52065
Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908
||| || || ||||| |||||||| | || || ||| ||||||||| || || |||
Sbjct 52064 ACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTTCTTC 52005
Query 61909 GAGAAACGTGTAGGCGACTATCA 61931
|||||||| || || || || ||
Sbjct 52004 GAGAAACGAGTGGGTGAGTACCA 51982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397555256703200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |