Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2640 282 8e-74
seq2704 235 1e-59
seq192 232 1e-58
seq9 131 3e-28
>seq2640
Length=210
Score = 282 bits (312), Expect = 8e-74
Identities = 188/209 (90%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26 TCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAA 85
|||| ||| || |||||||||||||||||||| |||||| ||||| |||| |||| |||
Sbjct 1 TCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGAAACAGGAATTTTTCTTTTAAA 60
Query 86 AAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAG 145
||||||||||| || | |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 61 AAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAG 120
Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 121 GACGTGCGGGTCTATTTTGTTGGGTTCTAGGACCGCCGTAATGATTAATAGGGACAGGCG 180
Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTG 234
|||| |||||||||||||||||||||||
Sbjct 181 GGGGGATCAGTATTCAATTGTCAGAGGTG 209
>seq2704
Length=201
Score = 235 bits (260), Expect = 1e-59
Identities = 170/195 (87%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||| |
Sbjct 3 CATGCCCTTCACTGGGTGTGGCGGGGGAACAGGACTTTTTCTTTTAAAAAAATAGAGGGC 62
Query 98 TCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157
|| |||||||| |||||| | |||||||||||||||||| ||||||| |||||| ||
Sbjct 63 TCCCGGCAGGCCTATGCTCGGAAACATTAGCATGGAATAATGAAATAGGA-GTGCGGGTC 121
Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217
||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 122 TATTTTGTTGGGTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGGATCAGGA 181
Query 218 TTCAATTGTCAGAGG 232
|| ||||||||||||
Sbjct 182 TTTAATTGTCAGAGG 196
>seq192
Length=8169
Score = 232 bits (256), Expect = 1e-58
Identities = 141/148 (95%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 171 TCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGA 230
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1837 TCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGA 1896
Query 231 GGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1897 GGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTT 1956
Query 291 TCATTAATCAGTGAACGAAAGTTAGGGG 318
||||||||||| ||||||||||||||||
Sbjct 1957 TCATTAATCAG-GAACGAAAGTTAGGGG 1983
Score = 105 bits (116), Expect = 1e-20
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 1406 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 1465
Query 65 GCCAGGACTTTTACTT 80
||||||||||||||
Sbjct 1466 AACAGGACTTTTACTT 1481
>seq9
Length=471630
Score = 131 bits (144), Expect = 3e-28
Identities = 86/95 (91%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 409966 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 409907
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||||||||||||| |||||||||||||||| ||
Sbjct 409906 AACAGGACTTTTACTATGAAAAAATTAGAGTGCTC 409872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915174987584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |