Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2640 282 8e-74 seq2704 235 1e-59 seq192 232 1e-58 seq9 131 3e-28 >seq2640 Length=210 Score = 282 bits (312), Expect = 8e-74 Identities = 188/209 (90%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26 TCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAA 85 |||| ||| || |||||||||||||||||||| |||||| ||||| |||| |||| ||| Sbjct 1 TCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGAAACAGGAATTTTTCTTTTAAA 60 Query 86 AAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAG 145 ||||||||||| || | |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 61 AAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATGAAATAG 120 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || || Sbjct 121 GACGTGCGGGTCTATTTTGTTGGGTTCTAGGACCGCCGTAATGATTAATAGGGACAGGCG 180 Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTG 234 |||| ||||||||||||||||||||||| Sbjct 181 GGGGGATCAGTATTCAATTGTCAGAGGTG 209 >seq2704 Length=201 Score = 235 bits (260), Expect = 1e-59 Identities = 170/195 (87%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||| | Sbjct 3 CATGCCCTTCACTGGGTGTGGCGGGGGAACAGGACTTTTTCTTTTAAAAAAATAGAGGGC 62 Query 98 TCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 || |||||||| |||||| | |||||||||||||||||| ||||||| |||||| || Sbjct 63 TCCCGGCAGGCCTATGCTCGGAAACATTAGCATGGAATAATGAAATAGGA-GTGCGGGTC 121 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 122 TATTTTGTTGGGTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGGATCAGGA 181 Query 218 TTCAATTGTCAGAGG 232 || |||||||||||| Sbjct 182 TTTAATTGTCAGAGG 196 >seq192 Length=8169 Score = 232 bits (256), Expect = 1e-58 Identities = 141/148 (95%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 171 TCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGA 230 ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1837 TCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGA 1896 Query 231 GGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290 ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1897 GGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTT 1956 Query 291 TCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||| |||||||||||||||| Sbjct 1957 TCATTAATCAG-GAACGAAAGTTAGGGG 1983 Score = 105 bits (116), Expect = 1e-20 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 1406 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 1465 Query 65 GCCAGGACTTTTACTT 80 |||||||||||||| Sbjct 1466 AACAGGACTTTTACTT 1481 >seq9 Length=471630 Score = 131 bits (144), Expect = 3e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 409966 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 409907 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||||||||||||| |||||||||||||||| || Sbjct 409906 AACAGGACTTTTACTATGAAAAAATTAGAGTGCTC 409872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915174987584