Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq192 410 5e-112 >seq192 Length=8169 Score = 410 bits (454), Expect = 5e-112 Identities = 352/426 (83%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 3907 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3966 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3967 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 4026 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 4027 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAG 4086 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 |||||||||| | |||||||||| | | | ||| || || ||| || ||||||| Sbjct 4087 GGAAGCGCTTACGACCAGACTTGGACCCGGCGAATCATCCAGCGTTCTC-GCTGGTGCAC 4145 Query 252 TCTTCTGCGGT-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGG 310 | | | | | |||||||||||||| ||| || | ||| |||||| | |||||||| | Sbjct 4146 TTCGCCGGGCTCCAGGCCAGCATCAGTTCGCGCCGGGGGACAAAGGCTCGGGGAATGTAG 4205 Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370 | ||| | ||| |||||||||||| | | ||| | | | |||||||||| ||| Sbjct 4206 CTCCC--CCGGGAGTGTTATAGCCCCTTGCGCAATAC-CCTGGGGCGGACTGAGGTTCGC 4262 Query 371 GC-TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAA 429 || || || ||||||||||||||||||| || |||| ||||||||| |||||||||||| Sbjct 4263 GCATCTCGCAAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTGAAACACGGACCAA 4322 Query 430 GGAGTC 435 |||||| Sbjct 4323 GGAGTC 4328 Score = 280 bits (310), Expect = 6e-73 Identities = 199/228 (87%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 456 GGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCAC 515 ||||||||||||| | ||||||||||||||||||| ||||| || | || ||| Sbjct 4680 GGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGAGCTTC----GGCGCAT 4735 Query 516 CATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCG 575 ||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| Sbjct 4736 CATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAGGAGCATACGGGGCCGGACCCG 4795 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4796 AAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 4855 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| ||||||||||||||||||||| |||| || ||||||| Sbjct 4856 AGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGGGCGA 4903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079941377150