Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq192 410 5e-112
>seq192
Length=8169
Score = 410 bits (454), Expect = 5e-112
Identities = 352/426 (83%), Gaps = 8/426 (2%)
Strand=Plus/Plus
Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72
||| |||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3907 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 3966
Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3967 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 4026
Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192
|||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||||
Sbjct 4027 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAG 4086
Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251
|||||||||| | |||||||||| | | | ||| || || ||| || |||||||
Sbjct 4087 GGAAGCGCTTACGACCAGACTTGGACCCGGCGAATCATCCAGCGTTCTC-GCTGGTGCAC 4145
Query 252 TCTTCTGCGGT-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGG 310
| | | | | |||||||||||||| ||| || | ||| |||||| | |||||||| |
Sbjct 4146 TTCGCCGGGCTCCAGGCCAGCATCAGTTCGCGCCGGGGGACAAAGGCTCGGGGAATGTAG 4205
Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370
| ||| | ||| |||||||||||| | | ||| | | | |||||||||| |||
Sbjct 4206 CTCCC--CCGGGAGTGTTATAGCCCCTTGCGCAATAC-CCTGGGGCGGACTGAGGTTCGC 4262
Query 371 GC-TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAA 429
|| || || ||||||||||||||||||| || |||| ||||||||| ||||||||||||
Sbjct 4263 GCATCTCGCAAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTGAAACACGGACCAA 4322
Query 430 GGAGTC 435
||||||
Sbjct 4323 GGAGTC 4328
Score = 280 bits (310), Expect = 6e-73
Identities = 199/228 (87%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 456 GGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCAC 515
||||||||||||| | ||||||||||||||||||| ||||| || | || |||
Sbjct 4680 GGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGCAGGTGAGAGCTTC----GGCGCAT 4735
Query 516 CATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCG 575
||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct 4736 CATCGACCGATCCTGATGTTCTCGGATGGATTTGAGTAGGAGCATACGGGGCCGGACCCG 4795
Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4796 AAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 4855
Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||||||| ||||||||||||||||||||| |||| || |||||||
Sbjct 4856 AGCGGTTCTGACGTGCAAATCGATCGTCAAATATGGGCATGGGGGCGA 4903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079941377150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |