Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2640 206 3e-51 seq2704 174 2e-41 seq192 113 5e-23 >seq2640 Length=210 Score = 206 bits (228), Expect = 3e-51 Identities = 151/174 (87%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| ||||| |||| |||| |||||||||||| | || | |||||||| |||||||||| Sbjct 37 GGAAACAGGAATTTTTCTTTTAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 96 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| |||||||||||||| |||||||||| || ||||||||||| Sbjct 97 CATTAGCATGGAATAATGAAATAGGACGTGCGGGTCTATTTTGTTGGGTTCTAGGACCG- 155 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTG 174 |||||||||| |||| ||| || |||||| ||||||||||||||||| ||||| Sbjct 156 CCGTAATGATTAATAGGGACAGGCGGGGGGATCAGTATTCAATTGTCAGAGGTG 209 >seq2704 Length=201 Score = 174 bits (192), Expect = 2e-41 Identities = 144/172 (84%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||| ||||||||| |||| |||||| ||||| | || |||||||| |||||| | | Sbjct 28 GGAAC-AGGACTTTTTCTTTTAAAAAAATAGAGGGCTCCCGGCAGGCCTATGCTCGGAAA 86 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||| |||||| |||||||||| || ||||||||||| Sbjct 87 CATTAGCATGGAATAATGAAATAGGA-GTGCGGGTCTATTTTGTTGGGTTCTAGGACCG- 144 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGG 172 |||||||||| |||| ||| ||||||||| |||| ||| |||||||| ||| Sbjct 145 CCGTAATGATTAATAGGGACAGTCGGGGGGATCAGGATTTAATTGTCAGAGG 196 >seq192 Length=8169 Score = 113 bits (124), Expect = 5e-23 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 110 TCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAA 169 |||||||||||| |||||||| |||| ||| ||||||||| ||||||||||||||||| Sbjct 1837 TCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAG 1895 Query 170 AGGTGAAATTCTTGGATTTATT 191 |||||||||||||||||||||| Sbjct 1896 AGGTGAAATTCTTGGATTTATT 1917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511986444320