Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 251 6e-62
seq103 167 2e-36
>seq4
Length=676188
Score = 251 bits (278), Expect = 6e-62
Identities = 637/960 (66%), Gaps = 8/960 (1%)
Strand=Plus/Minus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
|| || || ||||| || | |||||| ||||| | ||| ||||| || | |||||||||
Sbjct 640834 GGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACA 640775
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| ||||| || || || ||| || || ||||| |||| || || ||||| |
Sbjct 640774 ATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTG 640715
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||||| ||||||||||| | |||| | ||| | || ||||| |||| ||| | ||||
Sbjct 640714 TTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATG 640655
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240
| || ||| || | || | || || || |||| || | || || || |
Sbjct 640654 GAGTACCAGAGCTTCTGGGCACGAATGGT-CGCACGACCCTTGCCCTCACGCTCATACTT 640596
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
||| ||||| || || || || | || | ||| | || || | || ||
Sbjct 640595 TTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGG 640536
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
|||||||| | ||||||||| | || || || || ||| || ||||| || |||||
Sbjct 640535 GCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCA 640476
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
|| || ||| | ||| || || || || || |||||||||| || ||||| ||
Sbjct 640475 AAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATC 640416
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
||||||||||| | ||||| ||||| || |||| ||| ||||| || | ||| ||
Sbjct 640415 AAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCG 640356
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
||| |||||| |||||||| || | || |||||||| ||||| | ||| || |
Sbjct 640355 CTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAAT 640296
Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600
|| || || || | || ||||||||| | ||| ||| || || || || |||
Sbjct 640295 GACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTG 640236
Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTC 66658
||||||| || |||||||| ||| |||| ||||| || || || | ||||
Sbjct 640235 GACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTC 640176
Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718
| ||||| || ||| ||| |||| ||| | |||| |||| || || ||
Sbjct 640175 --ATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGA 640118
Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778
|| |||||| | || ||| || ||||||| ||||| || ||| | || |||
Sbjct 640117 CATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGAC 640058
Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACA 66837
||| || ||| || || | ||| ||||| || || || ||||||| || |||
Sbjct 640057 ATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACA 639998
Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGA 66897
||||| | | || || || || ||||| | | | |||| | | | || ||
Sbjct 639997 -CGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 639939
Query 66898 GCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957
|| |||| ||||||| ||||||||| || |||||||| | ||| || |||||
Sbjct 639938 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 639879
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482
|||| || ||||| || || | ||| ||||| || || |||||||||||| ||
Sbjct 641395 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGC 641336
Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542
|| ||| | ||| |||| |||||||| || | ||||| || || |||||||| |||| |
Sbjct 641335 TCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 641276
Query 65543 AACAATGAGTTTCGCAATCC 65562
| || |||||| || | |||
Sbjct 641275 AGCAGTGAGTTGCGAATTCC 641256
>seq103
Length=87482
Score = 167 bits (184), Expect = 2e-36
Identities = 243/335 (73%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
|| |||| |||||||||||||| || ||||| |||||||||| || ||| ||||| ||
Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728
Query 61147 TCCAAAGACATGAATGACTGG---GAGCGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202
|| ||||| || | |||||| | ||| | | || || ||| || |||||||
Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGA-CGATGAGAAATATTTCATCTC 34787
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | |||| |||||||| || || ||||| || ||||| ||||| || | || ||
Sbjct 34788 CCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCG 34847
Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| ||| || || ||||| | ||||| ||||| || ||||| |||||||| |
Sbjct 34848 CTTCAGCG-GCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||||||| |||||||||| | ||| | | | ||||| || ||||||| ||||| |
Sbjct 34907 TGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGAGCATG 34966
Query 61382 CGGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415
| |||| ||| | | |||||||| ||||||||
Sbjct 34967 CTCAACG-CAACTACCTCTTCAATGCTATCGAGAC 35000
Score = 125 bits (138), Expect = 6e-24
Identities = 333/503 (66%), Gaps = 13/503 (3%)
Strand=Plus/Plus
Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGA 61491
||| || |||||||| || |||||| ||| |||| | | || || | | ||
Sbjct 35076 GAAGGCAGATTGGGCTATCCGTTGGATT--CAGGACAAAGAATCCAGCTTCGCCCAGCGC 35133
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
||| | || ||||| | || || ||| | || ||||| || | ||||| | |||||
Sbjct 35134 TTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTC 35193
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611
||| ||||||| ||||| | ||||||||||| |||||| ||| || || || || ||
Sbjct 35194 TGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGT 35253
Query 61612 GACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGT 61671
|| ||||| |||| || ||||| ||||| || || || |||| |
Sbjct 35254 GATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGC----ACTCTCACT--TGAAGCAC 35307
Query 61672 CC-GTCGG--AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728
| | | | || || | ||||| || || || || || ||||| | ||
Sbjct 35308 CGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAG 35367
Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788
||||||||||| |||||||| | || | ||||||||| | | ||| |||
Sbjct 35368 TTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAACAG 35427
Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAAT 61848
|| ||||| ||||| ||||| || ||| | || | | | |||| || | | || ||
Sbjct 35428 TACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTACAAG 35487
Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908
||| || || ||||| |||||||| | || || ||| ||||||||| || || |||
Sbjct 35488 ACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTTCTTC 35547
Query 61909 GAGAAACGTGTAGGCGACTATCA 61931
|||||||| || || || || ||
Sbjct 35548 GAGAAACGAGTGGGTGAGTACCA 35570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397554757631120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |