Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 251 6e-62 seq103 167 2e-36 >seq4 Length=676188 Score = 251 bits (278), Expect = 6e-62 Identities = 637/960 (66%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || || || ||||| || | |||||| ||||| | ||| ||||| || | ||||||||| Sbjct 640834 GGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACA 640775 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| ||||| || || || ||| || || ||||| |||| || || ||||| | Sbjct 640774 ATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTG 640715 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||||| ||||||||||| | |||| | ||| | || ||||| |||| ||| | |||| Sbjct 640714 TTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATG 640655 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240 | || ||| || | || | || || || |||| || | || || || | Sbjct 640654 GAGTACCAGAGCTTCTGGGCACGAATGGT-CGCACGACCCTTGCCCTCACGCTCATACTT 640596 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 ||| ||||| || || || || | || | ||| | || || | || || Sbjct 640595 TTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGG 640536 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 |||||||| | ||||||||| | || || || || ||| || ||||| || ||||| Sbjct 640535 GCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCA 640476 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 || || ||| | ||| || || || || || |||||||||| || ||||| || Sbjct 640475 AAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATC 640416 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||||||||| | ||||| ||||| || |||| ||| ||||| || | ||| || Sbjct 640415 AAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCG 640356 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| |||||| |||||||| || | || |||||||| ||||| | ||| || | Sbjct 640355 CTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAAT 640296 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 || || || || | || ||||||||| | ||| ||| || || || || ||| Sbjct 640295 GACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTG 640236 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTC 66658 ||||||| || |||||||| ||| |||| ||||| || || || | |||| Sbjct 640235 GACATTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTC 640176 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | ||||| || ||| ||| |||| ||| | |||| |||| || || || Sbjct 640175 --ATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGA 640118 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || |||||| | || ||| || ||||||| ||||| || ||| | || ||| Sbjct 640117 CATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGAC 640058 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACA 66837 ||| || ||| || || | ||| ||||| || || || ||||||| || ||| Sbjct 640057 ATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACA 639998 Query 66838 TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGA 66897 ||||| | | || || || || ||||| | | | |||| | | | || || Sbjct 639997 -CGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 639939 Query 66898 GCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 || |||| ||||||| ||||||||| || |||||||| | ||| || ||||| Sbjct 639938 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 639879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482 |||| || ||||| || || | ||| ||||| || || |||||||||||| || Sbjct 641395 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGC 641336 Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542 || ||| | ||| |||| |||||||| || | ||||| || || |||||||| |||| | Sbjct 641335 TCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 641276 Query 65543 AACAATGAGTTTCGCAATCC 65562 | || |||||| || | ||| Sbjct 641275 AGCAGTGAGTTGCGAATTCC 641256 >seq103 Length=87482 Score = 167 bits (184), Expect = 2e-36 Identities = 243/335 (73%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| || ||||| |||||||||| || ||| ||||| || Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 61147 TCCAAAGACATGAATGACTGG---GAGCGT-TTATCGAGCGGTGAACAACATTTCATTAA 61202 || ||||| || | |||||| | ||| | | || || ||| || ||||||| Sbjct 34729 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGA-CGATGAGAAATATTTCATCTC 34787 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | |||| |||||||| || || ||||| || ||||| ||||| || | || || Sbjct 34788 CCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCG 34847 Query 61263 TTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| ||| || || ||||| | ||||| ||||| || ||||| |||||||| | Sbjct 34848 CTTCAGCG-GCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||||||| |||||||||| | ||| | | | ||||| || ||||||| ||||| | Sbjct 34907 TGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGAGCATG 34966 Query 61382 CGGAACGTGAACGA-TTGTTCAATGCCATCGAGAC 61415 | |||| ||| | | |||||||| |||||||| Sbjct 34967 CTCAACG-CAACTACCTCTTCAATGCTATCGAGAC 35000 Score = 125 bits (138), Expect = 6e-24 Identities = 333/503 (66%), Gaps = 13/503 (3%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGA 61491 ||| || |||||||| || |||||| ||| |||| | | || || | | || Sbjct 35076 GAAGGCAGATTGGGCTATCCGTTGGATT--CAGGACAAAGAATCCAGCTTCGCCCAGCGC 35133 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 ||| | || ||||| | || || ||| | || ||||| || | ||||| | ||||| Sbjct 35134 TTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTC 35193 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||| ||||||| ||||| | ||||||||||| |||||| ||| || || || || || Sbjct 35194 TGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGT 35253 Query 61612 GACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGT 61671 || ||||| |||| || ||||| ||||| || || || |||| | Sbjct 35254 GATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGC----ACTCTCACT--TGAAGCAC 35307 Query 61672 CC-GTCGG--AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728 | | | | || || | ||||| || || || || || ||||| | || Sbjct 35308 CGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAG 35367 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 ||||||||||| |||||||| | || | ||||||||| | | ||| ||| Sbjct 35368 TTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAACAG 35427 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAAT 61848 || ||||| ||||| ||||| || ||| | || | | | |||| || | | || || Sbjct 35428 TACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTACAAG 35487 Query 61849 ACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTC 61908 ||| || || ||||| |||||||| | || || ||| ||||||||| || || ||| Sbjct 35488 ACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTTCTTC 35547 Query 61909 GAGAAACGTGTAGGCGACTATCA 61931 |||||||| || || || || || Sbjct 35548 GAGAAACGAGTGGGTGAGTACCA 35570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554757631120