Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq18 206 4e-51
seq2 167 4e-39
seq29 136 6e-30
seq16 116 6e-24
>seq18
Length=640056
Score = 206 bits (228), Expect = 4e-51
Identities = 182/226 (81%), Gaps = 1/226 (0%)
Strand=Plus/Minus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640056 AGGCATTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 639997
Query 114 CATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGG 172
|||||||||| ||||||| | | ||||||||| | ||||||||||||||||| | | ||
Sbjct 639996 CATGCCAGAAAGGGGTGAATTCCGCCTGCACATTGAAGTCGGATACGAATAGGCCCTTGG 639937
Query 173 CCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGC 232
||| |||||||||||| ||| | | | | |||| | || | || |
Sbjct 639936 CCCAGAACCTTAGCAGATTGGCGTCTGTGTTTTCATGGAAATTGGAAGCACATTGCCAGT 639877
Query 233 GGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
| |||||||||| || |||||||| |||||||||||||||||||
Sbjct 639876 GAATTGCAATTTGACAGTGCGCAGGATTAAATCCTTTGCAGACGAC 639831
>seq2
Length=5130782
Score = 167 bits (184), Expect = 4e-39
Identities = 115/129 (89%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 53 CAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3671769 CAGGCATTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 3671828
Query 113 CCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCG 171
||||||||||| ||||||| | | | | ||||| | ||||||||||||||||| | | |
Sbjct 3671829 CCATGCCAGAAAGGGGTGAATTCCGCATACACATTGAAGTCGGATACGAATAGGCCCTTG 3671888
Query 172 GCCCCGAAC 180
|||| ||||
Sbjct 3671889 GCCCAGAAC 3671897
>seq29
Length=65974
Score = 136 bits (150), Expect = 6e-30
Identities = 84/87 (97%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 85 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 28
Query 61 GCCGCGAAGCTACCATCTGCTGGATTA 87
|||||||||||||||||||||||||||
Sbjct 27 GCCGCGAAGCTACCATCTGCTGGATTA 1
>seq16
Length=977426
Score = 116 bits (128), Expect = 6e-24
Identities = 137/189 (72%), Gaps = 30/189 (16%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||| ||| |
Sbjct 573493 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTGGCGGCTGTCCGACCAAGCATT 573550
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||| || |||| |||||||||
Sbjct 573551 ACCGCGAAGCTACCATTTG---------------------------CAGAGTCCATGCCA 573583
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||| |||||| | | |||||| || | |||||||||| |||||| | | |||| |||
Sbjct 573584 GAAATGGGTGAATTCCGCCTGCAGATTGAAGTCGGATACAAATAGGCCCTTAGCCCAGAA 573643
Query 180 CCTTAGCAG 188
|||||| ||
Sbjct 573644 CCTTAGTAG 573652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199603200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |