Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq18 206 4e-51 seq2 167 4e-39 seq29 136 6e-30 seq16 116 6e-24 >seq18 Length=640056 Score = 206 bits (228), Expect = 4e-51 Identities = 182/226 (81%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640056 AGGCATTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 639997 Query 114 CATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGG 172 |||||||||| ||||||| | | ||||||||| | ||||||||||||||||| | | || Sbjct 639996 CATGCCAGAAAGGGGTGAATTCCGCCTGCACATTGAAGTCGGATACGAATAGGCCCTTGG 639937 Query 173 CCCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGC 232 ||| |||||||||||| ||| | | | | |||| | || | || | Sbjct 639936 CCCAGAACCTTAGCAGATTGGCGTCTGTGTTTTCATGGAAATTGGAAGCACATTGCCAGT 639877 Query 233 GGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | |||||||||| || |||||||| ||||||||||||||||||| Sbjct 639876 GAATTGCAATTTGACAGTGCGCAGGATTAAATCCTTTGCAGACGAC 639831 >seq2 Length=5130782 Score = 167 bits (184), Expect = 4e-39 Identities = 115/129 (89%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 53 CAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3671769 CAGGCATTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 3671828 Query 113 CCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCG 171 ||||||||||| ||||||| | | | | ||||| | ||||||||||||||||| | | | Sbjct 3671829 CCATGCCAGAAAGGGGTGAATTCCGCATACACATTGAAGTCGGATACGAATAGGCCCTTG 3671888 Query 172 GCCCCGAAC 180 |||| |||| Sbjct 3671889 GCCCAGAAC 3671897 >seq29 Length=65974 Score = 136 bits (150), Expect = 6e-30 Identities = 84/87 (97%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 85 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 28 Query 61 GCCGCGAAGCTACCATCTGCTGGATTA 87 ||||||||||||||||||||||||||| Sbjct 27 GCCGCGAAGCTACCATCTGCTGGATTA 1 >seq16 Length=977426 Score = 116 bits (128), Expect = 6e-24 Identities = 137/189 (72%), Gaps = 30/189 (16%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||| ||| | Sbjct 573493 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTGGCGGCTGTCCGACCAAGCATT 573550 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||| || |||| ||||||||| Sbjct 573551 ACCGCGAAGCTACCATTTG---------------------------CAGAGTCCATGCCA 573583 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||| |||||| | | |||||| || | |||||||||| |||||| | | |||| ||| Sbjct 573584 GAAATGGGTGAATTCCGCCTGCAGATTGAAGTCGGATACAAATAGGCCCTTAGCCCAGAA 573643 Query 180 CCTTAGCAG 188 |||||| || Sbjct 573644 CCTTAGTAG 573652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199603200