Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 237 1e-57 seq1 159 3e-34 >seq4 Length=3241893 Score = 237 bits (262), Expect = 1e-57 Identities = 464/681 (68%), Gaps = 6/681 (1%) Strand=Plus/Plus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 ||||| | || || | |||| ||||| | || || ||||| || | ||| || || Sbjct 827252 TCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTCCACTCGCCG 827311 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 | || | || || ||| || || || || ||||| | ||||| || | || || Sbjct 827312 TTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGA 827371 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || || || |||| ||||| || || | ||| ||||| | || | |||||| Sbjct 827372 GCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCG 827431 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 |||||||| |||||||||||||| |||| || |||||| ||| ||||| || || Sbjct 827432 TGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACA 827491 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 || | |||| ||||||| ||||||| | ||| || | ||| ||||| || ||||||| Sbjct 827492 TACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTT 827551 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 || || | ||| || || || || || ||| ||||||||||||||||| || Sbjct 827552 GTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCT 827611 Query 66623 GCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCGTCAATGGAGT 66680 || || || ||||| || || || | || ||| | ||||| || ||| || Sbjct 827612 GCGGTTTTGGAGATCATGGCGCA--CGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGT 827669 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 | |||| || | |||| |||| || | |||||| || || | || || Sbjct 827670 CCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGGGTCCCCGCATTGA 827729 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGA 66800 ||||||| || | |||||| || ||||| | || |||||||||||||| ||||| || Sbjct 827730 AGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTAATTGTATGTCTCAATTG 827789 Query 66801 CAGCATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGGTATTGAGGC 66859 | ||| |||| ||||||||| || |||| | |||| |||||||| | || ||| || Sbjct 827790 CCTTATCGATGTCTTCGCCATGTATGCCGACGGACACA-CGCATCAGCATGTGTTGTGGA 827848 Query 66860 CGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCA 66919 || ||| | | || || || | | | ||| |||||||| || ||||||| ||| Sbjct 827849 CGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAGTCTTGAAACCG 827908 Query 66920 AAGTACGAGTAATTGAAATCG 66940 ||| || ||| ||||| ||| Sbjct 827909 AAGAACTGGTAGTTGAAGTCG 827929 Score = 140 bits (154), Expect = 3e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||||| || |||| || || | ||||||||| ||||| || || | ||| ||||||| || Sbjct 826931 CCACATACATGGGCAGAGCTAAAGATGCGAGATTGCACACTGCGACCTCCTCAGGAGAGG 826990 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | |||| || || || ||||| || || || ||| || || |||| ||||| || | Sbjct 826991 TGTACTGGATGATCTCTGTGCAAAGGTTGGAGCTGCGGATCGTTCCCAGATTCTTCTGGT 827050 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||||||||||| ||||| ||||||| |||||| || | || ||||| ||| | Sbjct 827051 TGCTCTTGCGATTGCAAGCATCTTTGTACAGCATGTATGGGTTTCCAGTCTCGGTTTGAG 827110 Query 66171 ACTCAATGATGGCGTGCCAAAG 66192 ||| | |||||| | |||||| Sbjct 827111 CCTCGAGGATGGCATACCAAAG 827132 Score = 138 bits (152), Expect = 9e-28 Identities = 317/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| ||||||||||| | | || ||||||| | || | ||| ||||||||||| ||| Sbjct 826036 TCGACAGTGAACTGGATGGGAGCAGAAGCCGCCATCGTTCGAAGGTAGTACATGCCCGTC 826095 Query 65138 TTGAGGCC-AGCA--CGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGG 65193 ||||| || ||| | || |||| || ||||| || | | || |||| | | || Sbjct 826096 TTGAGACCGAGCTTCCACCCAGCAAAG---TGCATAGAGG-TGATCTTGCCCATGGTAGG 826151 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 || || || ||||| | |||||| ||| |||||| | |||||||||||||| Sbjct 826152 TTCCTTCATGTGGATATTGAGAGACTGAGACTGGTCGATGAAGGCGCCACGATCTGCAGC 826211 Query 65254 CATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG-GCGACGTACCT 65312 ||| | | |||| | | || || ||||| || |||||||| || || | | | Sbjct 826212 CATCTGCAGGATATGTCTCTGTGAGATTTCCCACACAGTCTTGTAGAGTGCTTTG-ATAT 826270 Query 65313 CAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCA 65372 || || || | || ||| | || |||| || || || | ||| || Sbjct 826271 CATCGGGGATGTTGGGGATCCGCTGAATAGAGCCACCTTCGGCGATGATCCTATTCTTCA 826330 Query 65373 TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTT 65432 | || |||||||| |||| |||| ||||| || | ||| |||||| || | Sbjct 826331 TGTTGTCGGACCACAAGCCCATGTCGACAAGATCTTTGAGCAACCAGGGATTGACGATCT 826390 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| | || ||||| ||| ||||||||||| || || |||||| ||| Sbjct 826391 GGAACTCGCCAGCGAGAACACGGCGGGAGTAGATGTTGGAGGTATAAGGCTCAAAGCATT 826450 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGAC 65541 | |||| || ||||| || | ||||| ||||| ||||| ||||| || Sbjct 826451 CGTTGTTACCGAGAATCTGAGATGTAGAGGCAGTCGGCATAGGAGCCAC 826499 >seq1 Length=5232100 Score = 159 bits (176), Expect = 3e-34 Identities = 236/329 (72%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| ||||| ||||||||||||||||| | || ||| ||||| | ||| Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874 Query 61150 AAAGACATGAATGACTGG-----GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 |||||| | | |||||| ||| | || || || ||| | |||||| || Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAAT-GA-CGATGAGCGCTTCTTCATTTCAC 3073816 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263 | || | || ||||| ||||| || ||||| |||||||| |||||| | | || || | Sbjct 3073815 ACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCT 3073756 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || ||| | |||| ||| | | |||||||| || ||||| ||||||||||| ||| Sbjct 3073755 TTAGCGGCG-AGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATG 3073697 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| |||||||||||| |||| | | ||||| || |||||||| |||| | Sbjct 3073696 GAGAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATACATCAGCGAGCCCAAG 3073637 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGA 61412 |||| | ||||||||||||| || Sbjct 3073636 CAACGCACATATCTGTTCAATGCCATTGA 3073608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || ||||| | ||||||||| | || ||||||||||| || || | ||||| ||| | Sbjct 3073469 GCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCATCTTCTGGCTC 3073410 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| || || || |||||||| ||||||||| ||||| | || || || || ||| Sbjct 3073409 AAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCTCTCGTGATGAG 3073350 Query 61618 GGCATGCA 61625 |||||||| Sbjct 3073349 GGCATGCA 3073342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567757732000